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Page: TH1

16S rRNA Refseq V15.23 Genomic RefSeq V10.1

Human Oral Microbiome Taxonomic Hierarchy
(Note: showing also non-oral/nasal reference taxa)

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Domain Archaea [ 1, 3, 3 ]*

Phylum Euryarchaeota [ 1, 3, 3 ]

Class Methanobacteria [ 1, 3, 3 ]

Order Methanobacteriales [ 1, 3, 3 ]

Family Methanobacteriaceae [ 1, 3, 3 ]

Genus Methanobrevibacter [ 1, 3, 3 ]

Species Methanobrevibacter oralis [ 1, 3, 3 ]

Domain Bacteria [ 790, 2120, 1012 ]

Phylum Absconditabacteria (SR1) [ 5, 2, 3 ]

Class Absconditabacteria (SR1) [C-1] [ 3, 1, 3 ]

Order Absconditabacteria (SR1) [O-1] [ 3, 1, 3 ]

Family Absconditabacteria (SR1) [F-1] [ 3, 1, 3 ]

Genus Absconditabacteria (SR1) [G-1] [ 3, 1, 3 ]

Species Absconditabacteria (SR1) [G-1] bacterium HMT 345 [ 1, 0, 1 ]

Species Absconditabacteria (SR1) [G-1] bacterium HMT 874 [ 1, 1, 1 ]

Species Absconditabacteria (SR1) [G-1] bacterium HMT 875 [ 1, 0, 1 ]

Class Absconditabacteria (SR1) [C-2] [ 1, 0, 0 ]

Order Absconditabacteria (SR1) [O-2] [ 1, 0, 0 ]

Family Absconditabacteria (SR1) [F-2] [ 1, 0, 0 ]

Genus Absconditabacteria (SR1) [G-2] [ 1, 0, 0 ]

Species Absconditabacteria (SR1) [G-2] bacterium HMT 990 [ 1, 0, 0 ]

Class Absconditabacteria (SR1) [C-3] [ 1, 1, 0 ]

Order Absconditabacteria (SR1) [O-3] [ 1, 1, 0 ]

Family Absconditabacteria (SR1) [F-3] [ 1, 1, 0 ]

Genus Absconditabacteria (SR1) [G-3] [ 1, 1, 0 ]

Species Absconditabacteria (SR1) [G-3] bacterium HMT 991 [ 1, 1, 0 ]

Phylum Actinobacteria [ 119, 309, 153 ]

Class Actinomycetia [ 104, 291, 136 ]

Order Actinomycetales [ 43, 58, 60 ]

Family Actinomycetaceae [ 34, 45, 50 ]

Genus Actinomyces [ 21, 25, 32 ]

Species Actinomyces dentalis [ 1, 1, 1 ]

Species Actinomyces gerencseriae [ 1, 1, 2 ]

Species Actinomyces graevenitzii [ 1, 2, 2 ]

Species Actinomyces israelii [ 1, 1, 1 ]

Species Actinomyces johnsonii [ 1, 3, 1 ]

Species Actinomyces massiliensis [ 1, 2, 1 ]

Species Actinomyces naeslundii [ 1, 1, 3 ]

Species Actinomyces oricola [ 1, 1, 1 ]

Species Actinomyces oris [ 1, 2, 2 ]

Species Actinomyces radicidentis [ 1, 1, 1 ]

Species Actinomyces sp. HMT 169 [ 1, 1, 3 ]

Species Actinomyces sp. HMT 170 [ 1, 1, 1 ]

Species Actinomyces sp. HMT 171 [ 1, 2, 2 ]

Species Actinomyces sp. HMT 175 [ 1, 1, 2 ]

Species Actinomyces sp. HMT 414 [ 1, 1, 1 ]

Species Actinomyces sp. HMT 448 [ 1, 1, 2 ]

Species Actinomyces sp. HMT 525 [ 1, 0, 1 ]

Species Actinomyces sp. HMT 896 [ 1, 0, 1 ]

Species Actinomyces sp. HMT 897 [ 1, 1, 1 ]

Species Actinomyces timonensis [ 1, 1, 2 ]

Species Actinomyces viscosus [ 1, 1, 1 ]

Genus Arcanobacterium [ 1, 1, 1 ]

Species Arcanobacterium haemolyticum [ 1, 1, 1 ]

Genus Mobiluncus [ 1, 4, 1 ]

Species Mobiluncus mulieris [ 1, 4, 1 ]

Genus Peptidiphaga [ 2, 2, 3 ]

Species Peptidiphaga gingivicola [ 1, 1, 1 ]

Species Peptidiphaga sp. HMT 183 [ 1, 1, 2 ]

Genus Schaalia [ 9, 13, 13 ]

Species Schaalia cardiffensis [ 1, 1, 1 ]

Species Schaalia georgiae [ 1, 2, 1 ]

Species Schaalia lingnae [Not Validly Published] [ 1, 1, 3 ]

Species Schaalia meyeri [ 1, 1, 1 ]

Species Schaalia odontolytica [ 1, 4, 1 ]

Species Schaalia sp. HMT 172 [ 1, 1, 1 ]

Species Schaalia sp. HMT 178 [ 1, 1, 1 ]

Species Schaalia sp. HMT 180 [ 1, 1, 3 ]

Species Schaalia sp. HMT 877 [ 1, 1, 1 ]

Family Dermacoccaceae [ 1, 1, 1 ]

Genus Kytococcus [ 1, 1, 1 ]

Species Kytococcus sedentarius [ 1, 1, 1 ]

Family Dietziaceae [ 1, 2, 1 ]

Genus Dietzia [ 1, 2, 1 ]

Species Dietzia cinnamea [ 1, 2, 1 ]

Family Micrococcaceae [ 7, 10, 8 ]

Genus Kocuria [ 3, 2, 3 ]

Species Kocuria palustris [ 1, 1, 1 ]

Species Kocuria rhizophila [ 1, 1, 1 ]

Species Kocuria sp. HMT 189 [ 1, 0, 1 ]

Genus Micrococcus [ 1, 1, 1 ]

Species Micrococcus luteus [ 1, 1, 1 ]

Genus Rothia [ 3, 7, 4 ]

Species Rothia aeria [ 1, 2, 2 ]

Species Rothia dentocariosa [ 1, 2, 1 ]

Species Rothia mucilaginosa [ 1, 3, 1 ]

Order Bifidobacteriales [ 12, 54, 15 ]

Family Bifidobacteriaceae [ 12, 54, 15 ]

Genus Alloscardovia [ 1, 2, 2 ]

Species Alloscardovia omnicolens [ 1, 2, 2 ]

Genus Bifidobacteriaceae [G-2] [ 1, 0, 1 ]

Species Bifidobacteriaceae [G-2] bacterium HMT 407 [ 1, 0, 1 ]

Genus Bifidobacterium [ 6, 39, 7 ]

Species Bifidobacterium animalis [ 1, 12, 2 ]

Species Bifidobacterium breve [ 1, 6, 1 ]

Species Bifidobacterium dentium [ 1, 4, 1 ]

Species Bifidobacterium longum [ 1, 14, 1 ]

Species Bifidobacterium scardovii [ 1, 1, 1 ]

Species Bifidobacterium subtile [ 1, 2, 1 ]

Genus Gardnerella [ 1, 8, 1 ]

Species Gardnerella vaginalis [ 1, 8, 1 ]

Genus Parascardovia [ 1, 3, 1 ]

Species Parascardovia denticolens [ 1, 3, 1 ]

Genus Scardovia [ 2, 2, 3 ]

Species Scardovia inopinata [ 1, 1, 1 ]

Species Scardovia wiggsiae [ 1, 1, 2 ]

Order Corynebacteriales [ 32, 145, 41 ]

Family Corynebacteriaceae [ 28, 133, 36 ]

Genus Corynebacterium [ 27, 132, 35 ]

Species Corynebacterium accolens [ 1, 9, 1 ]

Species Corynebacterium afermentans [ 1, 1, 1 ]

Species Corynebacterium amycolatum [ 1, 25, 1 ]

Species Corynebacterium appendicis [ 1, 1, 1 ]

Species Corynebacterium aurimucosum [ 1, 20, 1 ]

Species Corynebacterium bovis [ 1, 1, 1 ]

Species Corynebacterium coyleae [ 1, 10, 4 ]

Species Corynebacterium diphtheriae [ 1, 16, 1 ]

Species Corynebacterium durum [ 1, 1, 3 ]

Species Corynebacterium jeikeium [ 1, 2, 1 ]

Species Corynebacterium kroppenstedtii [ 1, 1, 1 ]

Species Corynebacterium macginleyi [ 1, 3, 1 ]

Species Corynebacterium massiliense [ 1, 1, 1 ]

Species Corynebacterium mastitidis [ 1, 1, 2 ]

Species Corynebacterium matruchotii [ 1, 2, 3 ]

Species Corynebacterium minutissimum [ 1, 2, 1 ]

Species Corynebacterium mucifaciens [ 1, 1, 1 ]

Species Corynebacterium pilbarense [ 1, 2, 1 ]

Species Corynebacterium propinquum [ 1, 1, 1 ]

Species Corynebacterium pseudodiphtheriticum [ 1, 3, 1 ]

Species Corynebacterium simulans [ 1, 8, 1 ]

Species Corynebacterium singulare [ 1, 2, 1 ]

Species Corynebacterium sp. HMT 207 [ 1, 4, 1 ]

Species Corynebacterium striatum [ 1, 3, 1 ]

Species Corynebacterium tuberculostearicum [ 1, 7, 1 ]

Species Corynebacterium tuscaniense [ 1, 1, 1 ]

Species Corynebacterium urealyticum [ 1, 4, 1 ]

Genus Turicella [ 1, 1, 1 ]

Species Turicella otitidis [ 1, 1, 1 ]

Family Corynebacteriales [F-1] [ 1, 1, 2 ]

Genus Lawsonella [ 1, 1, 2 ]

Species Lawsonella clevelandensis [ 1, 1, 2 ]

Family Mycobacteriaceae [ 3, 11, 3 ]

Genus Mycobacterium [ 3, 11, 3 ]

Species Mycobacterium leprae [ 1, 2, 1 ]

Species Mycobacterium neoaurum [ 1, 1, 1 ]

Species Mycobacterium tuberculosis [ 1, 8, 1 ]

Order Micrococcales [ 8, 9, 9 ]

Family Brevibacteriaceae [ 1, 1, 2 ]

Genus Brevibacterium [ 1, 1, 2 ]

Species Brevibacterium paucivorans [ 1, 1, 2 ]

Family Dermabacteraceae [ 1, 2, 1 ]

Genus Dermabacter [ 1, 2, 1 ]

Species Dermabacter hominis [ 1, 2, 1 ]

Family Intrasporangiaceae [ 2, 2, 3 ]

Genus Arsenicicoccus [ 1, 1, 2 ]

Species Arsenicicoccus bolidensis [ 1, 1, 2 ]

Genus Janibacter [ 1, 1, 1 ]

Species Janibacter indicus [ 1, 1, 1 ]

Family Microbacteriaceae [ 2, 2, 2 ]

Genus Microbacterium [ 2, 2, 2 ]

Species Microbacterium flavescens [ 1, 1, 1 ]

Species Microbacterium ginsengisoli [ 1, 1, 1 ]

Family Promicromonosporaceae [ 1, 1, 0 ]

Genus Cellulosimicrobium [ 1, 1, 0 ]

Species Cellulosimicrobium cellulans [ 1, 1, 0 ]

Family Sanguibacteraceae [ 1, 1, 1 ]

Genus Sanguibacter [ 1, 1, 1 ]

Species Sanguibacter keddieii [ 1, 1, 1 ]

Order Propionibacteriales [ 9, 25, 11 ]

Family Propionibacteriaceae [ 9, 25, 11 ]

Genus Acidipropionibacterium [ 1, 2, 2 ]

Species Acidipropionibacterium acidifaciens [ 1, 2, 2 ]

Genus Arachnia [ 2, 5, 2 ]

Species Arachnia propionica [ 1, 4, 1 ]

Species Arachnia rubra [ 1, 1, 1 ]

Genus Cutibacterium [ 4, 17, 5 ]

Species Cutibacterium acnes [ 1, 13, 2 ]

Species Cutibacterium avidum [ 1, 2, 1 ]

Species Cutibacterium granulosum [ 1, 1, 1 ]

Species Cutibacterium sp. HMT 193 [ 1, 1, 1 ]

Genus Propionibacteriaceae [G-1] [ 1, 0, 1 ]

Species Propionibacteriaceae [G-1] bacterium HMT 915 [ 1, 0, 1 ]

Genus Propionibacteriaceae [G-2] [ 1, 1, 1 ]

Species Propionibacteriaceae [G-2] bacterium HMT 192 [ 1, 1, 1 ]

Class Coriobacteriia [ 15, 18, 17 ]

Order Coriobacteriales [ 13, 16, 15 ]

Family Atopobiaceae [ 5, 5, 5 ]

Genus Olsenella [ 5, 5, 5 ]

Species Olsenella profusa [ 1, 1, 1 ]

Species Olsenella sp. HMT 807 [ 1, 1, 1 ]

Species Olsenella sp. HMT 809 [ 1, 1, 1 ]

Species Olsenella sp. HMT 939 [ 1, 0, 1 ]

Species Olsenella uli [ 1, 2, 1 ]

Family Coriobacteriaceae [ 8, 11, 10 ]

Genus Atopobium [ 7, 10, 8 ]

Species Atopobium minutum [ 1, 1, 1 ]

Species Atopobium parvulum [ 1, 2, 1 ]

Species Atopobium rimae [ 1, 2, 1 ]

Species Atopobium sp. HMT 199 [ 1, 1, 1 ]

Species Atopobium sp. HMT 416 [ 1, 1, 1 ]

Species Atopobium sp. HMT 810 [ 1, 1, 2 ]

Species Atopobium vaginae [ 1, 2, 1 ]

Genus Slackia [ 1, 1, 2 ]

Species Slackia exigua [ 1, 1, 2 ]

Order Eggerthellales [ 2, 2, 2 ]

Family Eggerthellaceae [ 2, 2, 2 ]

Genus Cryptobacterium [ 1, 1, 1 ]

Species Cryptobacterium curtum [ 1, 1, 1 ]

Genus Eggerthella [ 1, 1, 1 ]

Species Eggerthella lenta [ 1, 1, 1 ]

Phylum Bacteroidetes [ 125, 245, 179 ]

Class Bacteroidetes [C-1] [ 11, 0, 12 ]

Order Bacteroidetes [O-1] [ 11, 0, 12 ]

Family Bacteroidetes [F-1] [ 11, 0, 12 ]

Genus Bacteroidetes [G-3] [ 6, 0, 7 ]

Species Bacteroidetes [G-3] bacterium HMT 280 [ 1, 0, 1 ]

Species Bacteroidetes [G-3] bacterium HMT 281 [ 1, 0, 1 ]

Species Bacteroidetes [G-3] bacterium HMT 365 [ 1, 0, 2 ]

Species Bacteroidetes [G-3] bacterium HMT 436 [ 1, 0, 1 ]

Species Bacteroidetes [G-3] bacterium HMT 503 [ 1, 0, 1 ]

Species Bacteroidetes [G-3] bacterium HMT 899 [ 1, 0, 1 ]

Genus Bacteroidetes [G-4] [ 1, 0, 1 ]

Species Bacteroidetes [G-4] bacterium HMT 509 [ 1, 0, 1 ]

Genus Bacteroidetes [G-5] [ 3, 0, 3 ]

Species Bacteroidetes [G-5] bacterium HMT 505 [ 1, 0, 1 ]

Species Bacteroidetes [G-5] bacterium HMT 507 [ 1, 0, 1 ]

Species Bacteroidetes [G-5] bacterium HMT 511 [ 1, 0, 1 ]

Genus Bacteroidetes [G-7] [ 1, 0, 1 ]

Species Bacteroidetes [G-7] bacterium HMT 911 [ 1, 0, 1 ]

Class Bacteroidetes [C-2] [ 1, 0, 1 ]

Order Bacteroidetes [O-2] [ 1, 0, 1 ]

Family Bacteroidetes [F-2] [ 1, 0, 1 ]

Genus Bacteroidetes [G-6] [ 1, 0, 1 ]

Species Bacteroidetes [G-6] bacterium HMT 516 [ 1, 0, 1 ]

Class Bacteroidia [ 79, 222, 119 ]

Order Bacteroidales [ 79, 222, 119 ]

Family Bacteroidaceae [ 4, 8, 5 ]

Genus Bacteroidaceae [G-1] [ 1, 1, 1 ]

Species Bacteroidaceae [G-1] bacterium HMT 272 [ 1, 1, 1 ]

Genus Bacteroides [ 3, 7, 4 ]

Species Bacteroides heparinolyticus [ 1, 1, 2 ]

Species Bacteroides pyogenes [ 1, 5, 1 ]

Species Bacteroides zoogleoformans [ 1, 1, 1 ]

Family Bacteroidales [F-2] [ 1, 1, 2 ]

Genus Bacteroidales [G-2] [ 1, 1, 2 ]

Species Bacteroidales [G-2] bacterium HMT 274 [ 1, 1, 2 ]

Family Porphyromonadaceae [ 16, 86, 26 ]

Genus Porphyromonas [ 12, 74, 22 ]

Species Porphyromonas asaccharolytica [ 1, 2, 1 ]

Species Porphyromonas catoniae [ 1, 2, 2 ]

Species Porphyromonas endodontalis [ 1, 1, 4 ]

Species Porphyromonas gingivalis [ 1, 64, 1 ]

Species Porphyromonas pasteri [ 1, 1, 6 ]

Species Porphyromonas sp. HMT 275 [ 1, 1, 1 ]

Species Porphyromonas sp. HMT 277 [ 1, 0, 1 ]

Species Porphyromonas sp. HMT 278 [ 1, 1, 1 ]

Species Porphyromonas sp. HMT 284 [ 1, 0, 1 ]

Species Porphyromonas sp. HMT 285 [ 1, 0, 1 ]

Species Porphyromonas sp. HMT 930 [ 1, 0, 1 ]

Species Porphyromonas uenonis [ 1, 2, 2 ]

Genus Tannerella [ 4, 12, 4 ]

Species Tannerella forsythia [ 1, 2, 1 ]

Species Tannerella sp. HMT 286 [ 1, 7, 1 ]

Species Tannerella sp. HMT 808 [ 1, 3, 1 ]

Species Tannerella sp. HMT 916 [ 1, 0, 1 ]

Family Prevotellaceae [ 58, 127, 86 ]

Genus Alloprevotella [ 7, 3, 11 ]

Species Alloprevotella rava [ 1, 1, 2 ]

Species Alloprevotella sp. HMT 308 [ 1, 0, 1 ]

Species Alloprevotella sp. HMT 473 [ 1, 1, 2 ]

Species Alloprevotella sp. HMT 912 [ 1, 0, 2 ]

Species Alloprevotella sp. HMT 913 [ 1, 0, 1 ]

Species Alloprevotella sp. HMT 914 [ 1, 0, 1 ]

Species Alloprevotella tannerae [ 1, 1, 2 ]

Genus Prevotella [ 51, 124, 75 ]

Species Prevotella aurantiaca [ 1, 1, 1 ]

Species Prevotella baroniae [ 1, 3, 1 ]

Species Prevotella bivia [ 1, 5, 1 ]

Species Prevotella buccae [ 1, 2, 1 ]

Species Prevotella buccalis [ 1, 3, 1 ]

Species Prevotella dentalis [ 1, 1, 1 ]

Species Prevotella denticola [ 1, 9, 3 ]

Species Prevotella enoeca [ 1, 2, 1 ]

Species Prevotella fusca [ 1, 3, 2 ]

Species Prevotella histicola [ 1, 3, 1 ]

Species Prevotella intermedia [ 1, 30, 2 ]

Species Prevotella loescheii [ 1, 1, 1 ]

Species Prevotella maculosa [ 1, 3, 3 ]

Species Prevotella marshii [ 1, 2, 1 ]

Species Prevotella melaninogenica [ 1, 11, 1 ]

Species Prevotella micans [ 1, 3, 1 ]

Species Prevotella multiformis [ 1, 2, 1 ]

Species Prevotella multisaccharivorax [ 1, 1, 1 ]

Species Prevotella nanceiensis [ 1, 1, 1 ]

Species Prevotella nigrescens [ 1, 6, 2 ]

Species Prevotella oralis [ 1, 3, 2 ]

Species Prevotella oris [ 1, 3, 2 ]

Species Prevotella oulorum [ 1, 2, 2 ]

Species Prevotella pallens [ 1, 1, 1 ]

Species Prevotella pleuritidis [ 1, 1, 1 ]

Species Prevotella saccharolytica [ 1, 2, 2 ]

Species Prevotella salivae [ 1, 2, 1 ]

Species Prevotella scopos [ 1, 3, 1 ]

Species Prevotella shahii [ 1, 1, 1 ]

Species Prevotella sp. HMT 292 [ 1, 0, 2 ]

Species Prevotella sp. HMT 293 [ 1, 0, 1 ]

Species Prevotella sp. HMT 300 [ 1, 0, 3 ]

Species Prevotella sp. HMT 301 [ 1, 0, 1 ]

Species Prevotella sp. HMT 304 [ 1, 0, 1 ]

Species Prevotella sp. HMT 305 [ 1, 0, 2 ]

Species Prevotella sp. HMT 306 [ 1, 1, 1 ]

Species Prevotella sp. HMT 309 [ 1, 0, 2 ]

Species Prevotella sp. HMT 313 [ 1, 3, 2 ]

Species Prevotella sp. HMT 314 [ 1, 1, 1 ]

Species Prevotella sp. HMT 315 [ 1, 0, 2 ]

Species Prevotella sp. HMT 317 [ 1, 1, 2 ]

Species Prevotella sp. HMT 376 [ 1, 1, 1 ]

Species Prevotella sp. HMT 396 [ 1, 0, 1 ]

Species Prevotella sp. HMT 443 [ 1, 0, 1 ]

Species Prevotella sp. HMT 472 [ 1, 1, 2 ]

Species Prevotella sp. HMT 475 [ 1, 1, 2 ]

Species Prevotella sp. HMT 515 [ 1, 0, 1 ]

Species Prevotella sp. HMT 526 [ 1, 0, 2 ]

Species Prevotella sp. HMT 820 [ 1, 1, 1 ]

Species Prevotella sp. HMT 942 [ 1, 0, 1 ]

Species Prevotella veroralis [ 1, 4, 3 ]

Class Chitinophagia [ 2, 1, 3 ]

Order Chitinophagales [ 2, 1, 3 ]

Family Chitinophagaceae [ 2, 1, 3 ]

Genus Flavitalea [ 1, 0, 1 ]

Species Flavitalea sp. HMT 320 [ 1, 0, 1 ]

Genus Segetibacter [ 1, 1, 2 ]

Species Segetibacter aerophilus [ 1, 1, 2 ]

Class Flavobacteriia [ 29, 22, 41 ]

Order Flavobacteriales [ 29, 22, 41 ]

Family Flavobacteriaceae [ 29, 22, 41 ]

Genus Bergeyella [ 7, 0, 8 ]

Species Bergeyella sp. HMT 206 [ 1, 0, 1 ]

Species Bergeyella sp. HMT 319 [ 1, 0, 1 ]

Species Bergeyella sp. HMT 322 [ 1, 0, 1 ]

Species Bergeyella sp. HMT 422 [ 1, 0, 2 ]

Species Bergeyella sp. HMT 900 [ 1, 0, 1 ]

Species Bergeyella sp. HMT 907 [ 1, 0, 1 ]

Species Bergeyella sp. HMT 931 [ 1, 0, 1 ]

Genus Capnocytophaga [ 22, 22, 33 ]

Species Capnocytophaga gingivalis [ 1, 1, 2 ]

Species Capnocytophaga granulosa [ 1, 1, 2 ]

Species Capnocytophaga haemolytica [ 1, 1, 2 ]

Species Capnocytophaga leadbetteri [ 1, 1, 3 ]

Species Capnocytophaga ochracea [ 1, 3, 1 ]

Species Capnocytophaga sp. HMT 323 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 324 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 326 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 332 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 334 [ 1, 0, 1 ]

Species Capnocytophaga sp. HMT 335 [ 1, 1, 2 ]

Species Capnocytophaga sp. HMT 336 [ 1, 1, 3 ]

Species Capnocytophaga sp. HMT 338 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 380 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 412 [ 1, 1, 2 ]

Species Capnocytophaga sp. HMT 863 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 864 [ 1, 1, 2 ]

Species Capnocytophaga sp. HMT 878 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 901 [ 1, 0, 1 ]

Species Capnocytophaga sp. HMT 902 [ 1, 1, 1 ]

Species Capnocytophaga sp. HMT 903 [ 1, 1, 1 ]

Species Capnocytophaga sputigena [ 1, 1, 2 ]

Class Sphingobacteriia [ 3, 0, 3 ]

Order Sphingobacteriales [ 3, 0, 3 ]

Family Sphingobacteriaceae [ 3, 0, 3 ]

Genus Pedobacter [ 3, 0, 3 ]

Species Pedobacter sp. HMT 318 [ 1, 0, 1 ]

Species Pedobacter sp. HMT 321 [ 1, 0, 1 ]

Species Pedobacter sp. HMT 933 [ 1, 0, 1 ]

Phylum Chlamydiae [ 1, 5, 1 ]

Class Chlamydiia [ 1, 5, 1 ]

Order Chlamydiales [ 1, 5, 1 ]

Family Chlamydiaceae [ 1, 5, 1 ]

Genus Chlamydophila [ 1, 5, 1 ]

Species Chlamydophila pneumoniae [ 1, 5, 1 ]

Phylum Chlorobi [ 3, 3, 4 ]

Class Chlorobia [ 1, 1, 2 ]

Order Chlorobiales [ 1, 1, 2 ]

Family Chlorobiaceae [ 1, 1, 2 ]

Genus Chlorobium [ 1, 1, 2 ]

Species Chlorobium limicola [ 1, 1, 2 ]

Class Ignavibacteria [ 2, 2, 2 ]

Order Ignavibacteriales [ 2, 2, 2 ]

Family Ignavibacteriaceae [ 1, 1, 1 ]

Genus Ignavibacterium [ 1, 1, 1 ]

Species Ignavibacterium album [ 1, 1, 1 ]

Family Melioribacteraceae [ 1, 1, 1 ]

Genus Melioribacter [ 1, 1, 1 ]

Species Melioribacter roseus [ 1, 1, 1 ]

Phylum Chloroflexi [ 3, 4, 5 ]

Class Anaerolineae [ 2, 3, 3 ]

Order Anaerolineales [ 2, 3, 3 ]

Family Anaerolineaceae [ 2, 3, 3 ]

Genus Anaerolinea [ 1, 1, 2 ]

Species Anaerolinea thermophila [ 1, 1, 2 ]

Genus Anaerolineae [G-1] [ 1, 2, 1 ]

Species Anaerolineae [G-1] bacterium HMT 439 [ 1, 2, 1 ]

Class Caldilineae [ 1, 1, 2 ]

Order Caldilineales [ 1, 1, 2 ]

Family Caldilineaceae [ 1, 1, 2 ]

Genus Caldilinea [ 1, 1, 2 ]

Species Caldilinea aerophila [ 1, 1, 2 ]

Phylum Cyanobacteria [ 1, 1, 2 ]

Class Oscillatoriophycideae [ 1, 1, 2 ]

Order Oscillatoriophycideae [ 1, 1, 2 ]

Family Oscillatoriales [ 1, 1, 2 ]

Genus Arthrospira [ 1, 1, 2 ]

Species Arthrospira platensis [ 1, 1, 2 ]

Phylum Firmicutes [ 266, 958, 341 ]

Class Bacilli [ 104, 833, 123 ]

Order Bacillales [ 29, 123, 32 ]

Family Bacillaceae [ 5, 24, 6 ]

Genus Anoxybacillus [ 1, 1, 1 ]

Species Anoxybacillus flavithermus [ 1, 1, 1 ]

Genus Bacillus [ 3, 21, 4 ]

Species Bacillus anthracis [ 1, 13, 1 ]

Species Bacillus clausii [ 1, 1, 2 ]

Species Bacillus subtilis [ 1, 7, 1 ]

Genus Lysinibacillus [ 1, 2, 1 ]

Species Lysinibacillus fusiformis [ 1, 2, 1 ]

Family Gemellaceae [ 5, 6, 6 ]

Genus Gemella [ 5, 6, 6 ]

Species Gemella bergeri [ 1, 1, 1 ]

Species Gemella haemolysans [ 1, 2, 1 ]

Species Gemella morbillorum [ 1, 1, 2 ]

Species Gemella sanguinis [ 1, 1, 1 ]

Species Gemella sp. HMT 928 [ 1, 1, 1 ]

Family Listeriaceae [ 2, 24, 2 ]

Genus Brochothrix [ 1, 1, 1 ]

Species Brochothrix thermosphacta [ 1, 1, 1 ]

Genus Listeria [ 1, 23, 1 ]

Species Listeria monocytogenes [ 1, 23, 1 ]

Family Paenibacillaceae [ 3, 3, 3 ]

Genus Paenibacillus [ 3, 3, 3 ]

Species Paenibacillus glucanolyticus [ 1, 2, 1 ]

Species Paenibacillus phoenicis [ 1, 1, 1 ]

Species Paenibacillus sp. HMT 048 [ 1, 0, 1 ]

Family Staphylococcaceae [ 14, 66, 15 ]

Genus Jeotgalicoccus [ 1, 0, 1 ]

Species Jeotgalicoccus huakuii [ 1, 0, 1 ]

Genus Staphylococcus [ 13, 66, 14 ]

Species Staphylococcus aureus [ 1, 41, 1 ]

Species Staphylococcus auricularis [ 1, 1, 1 ]

Species Staphylococcus capitis [ 1, 1, 2 ]

Species Staphylococcus caprae [ 1, 1, 1 ]

Species Staphylococcus cohnii [ 1, 1, 1 ]

Species Staphylococcus epidermidis [ 1, 10, 1 ]

Species Staphylococcus haemolyticus [ 1, 1, 1 ]

Species Staphylococcus hominis [ 1, 1, 1 ]

Species Staphylococcus lugdunensis [ 1, 1, 1 ]

Species Staphylococcus pasteuri [ 1, 1, 1 ]

Species Staphylococcus pettenkoferi [ 1, 1, 1 ]

Species Staphylococcus schleiferi [ 1, 1, 1 ]

Species Staphylococcus warneri [ 1, 5, 1 ]

Order Lactobacillales [ 75, 710, 91 ]

Family Aerococcaceae [ 2, 2, 2 ]

Genus Abiotrophia [ 1, 1, 1 ]

Species Abiotrophia defectiva [ 1, 1, 1 ]

Genus Aerococcus [ 1, 1, 1 ]

Species Aerococcus viridans [ 1, 1, 1 ]

Family Carnobacteriaceae [ 4, 4, 6 ]

Genus Alloiococcus [ 1, 1, 1 ]

Species Alloiococcus otitis [ 1, 1, 1 ]

Genus Dolosigranulum [ 1, 1, 1 ]

Species Dolosigranulum pigrum [ 1, 1, 1 ]

Genus Granulicatella [ 2, 2, 4 ]

Species Granulicatella adiacens [ 1, 1, 2 ]

Species Granulicatella elegans [ 1, 1, 2 ]

Family Enterococcaceae [ 5, 17, 5 ]

Genus Enterococcus [ 5, 17, 5 ]

Species Enterococcus casseliflavus [ 1, 3, 1 ]

Species Enterococcus durans [ 1, 3, 1 ]

Species Enterococcus faecalis [ 1, 8, 1 ]

Species Enterococcus italicus [ 1, 1, 1 ]

Species Enterococcus saccharolyticus [ 1, 2, 1 ]

Family Lactobacillaceae [ 26, 119, 27 ]

Genus Lactobacillus [ 26, 119, 27 ]

Species Lactobacillus acidophilus [ 1, 9, 1 ]

Species Lactobacillus brevis [ 1, 3, 1 ]

Species Lactobacillus buchneri [ 1, 3, 1 ]

Species Lactobacillus casei [ 1, 9, 1 ]

Species Lactobacillus coleohominis [ 1, 1, 1 ]

Species Lactobacillus crispatus [ 1, 5, 1 ]

Species Lactobacillus fermentum [ 1, 5, 1 ]

Species Lactobacillus gasseri [ 1, 7, 1 ]

Species Lactobacillus iners [ 1, 14, 1 ]

Species Lactobacillus jensenii [ 1, 3, 1 ]

Species Lactobacillus johnsonii [ 1, 6, 1 ]

Species Lactobacillus kisonensis [ 1, 1, 1 ]

Species Lactobacillus oris [ 1, 2, 1 ]

Species Lactobacillus panis [ 1, 1, 1 ]

Species Lactobacillus paracasei [ 1, 6, 1 ]

Species Lactobacillus parafarraginis [ 1, 1, 1 ]

Species Lactobacillus pentosus [ 1, 1, 1 ]

Species Lactobacillus plantarum [ 1, 10, 1 ]

Species Lactobacillus rapi [ 1, 1, 1 ]

Species Lactobacillus reuteri clade 818 [ 1, 9, 1 ]

Species Lactobacillus reuteri clade 938 [ 1, 0, 1 ]

Species Lactobacillus rhamnosus [ 1, 12, 1 ]

Species Lactobacillus salivarius [ 1, 8, 1 ]

Species Lactobacillus sp. HMT 052 [ 1, 0, 1 ]

Species Lactobacillus ultunensis [ 1, 1, 2 ]

Species Lactobacillus vaginalis [ 1, 1, 1 ]

Family Streptococcaceae [ 38, 568, 51 ]

Genus Lactococcus [ 1, 13, 2 ]

Species Lactococcus lactis [ 1, 13, 2 ]

Genus Streptococcus [ 37, 555, 49 ]

Species Streptococcus agalactiae [ 1, 11, 1 ]

Species Streptococcus anginosus [ 1, 8, 1 ]

Species Streptococcus australis [ 1, 1, 2 ]

Species Streptococcus constellatus [ 1, 5, 1 ]

Species Streptococcus cristatus clade 578 [ 1, 5, 1 ]

Species Streptococcus cristatus clade 886 [ 1, 1, 1 ]

Species Streptococcus downei [ 1, 1, 1 ]

Species Streptococcus gordonii [ 1, 1, 1 ]

Species Streptococcus infantis clade 431 [ 1, 1, 1 ]

Species Streptococcus infantis clade 638 [ 1, 7, 1 ]

Species Streptococcus intermedius [ 1, 8, 1 ]

Species Streptococcus lactarius [ 1, 1, 1 ]

Species Streptococcus mitis [ 1, 134, 1 ]

Species Streptococcus mutans [ 1, 247, 1 ]

Species Streptococcus oralis subsp. dentisani clade 058 [ 1, 1, 3 ]

Species Streptococcus oralis subsp. dentisani clade 398 [ 1, 2, 2 ]

Species Streptococcus oralis subsp. oralis [ 1, 11, 1 ]

Species Streptococcus oralis subsp. tigurinus clade 070 [ 1, 1, 2 ]

Species Streptococcus oralis subsp. tigurinus clade 071 [ 1, 1, 3 ]

Species Streptococcus parasanguinis clade 411 [ 1, 1, 4 ]

Species Streptococcus parasanguinis clade 721 [ 1, 6, 1 ]

Species Streptococcus peroris [ 1, 1, 1 ]

Species Streptococcus pneumoniae [ 1, 52, 1 ]

Species Streptococcus pyogenes [ 1, 17, 1 ]

Species Streptococcus salivarius [ 1, 8, 2 ]

Species Streptococcus sanguinis [ 1, 13, 1 ]

Species Streptococcus sinensis [ 1, 1, 1 ]

Species Streptococcus sobrinus [ 1, 2, 1 ]

Species Streptococcus sp. HMT 056 [ 1, 1, 1 ]

Species Streptococcus sp. HMT 057 [ 1, 0, 1 ]

Species Streptococcus sp. HMT 061 [ 1, 1, 1 ]

Species Streptococcus sp. HMT 064 [ 1, 1, 1 ]

Species Streptococcus sp. HMT 066 [ 1, 1, 2 ]

Species Streptococcus sp. HMT 074 [ 1, 0, 1 ]

Species Streptococcus sp. HMT 423 [ 1, 0, 1 ]

Species Streptococcus thermophilus [ 1, 1, 1 ]

Species Streptococcus vestibularis [ 1, 2, 1 ]

Class Clostridia [ 92, 67, 117 ]

Order Clostridiales [ 92, 67, 117 ]

Family Clostridiales [F-1] [ 2, 0, 2 ]

Genus Clostridiales [F-1][G-1] [ 1, 0, 1 ]

Species Clostridiales [F-1][G-1] bacterium HMT 093 [ 1, 0, 1 ]

Genus Clostridiales [F-1][G-2] [ 1, 0, 1 ]

Species Clostridiales [F-1][G-2] bacterium HMT 402 [ 1, 0, 1 ]

Family Clostridiales [F-3] [ 1, 1, 1 ]

Genus Clostridiales [F-3][G-1] [ 1, 1, 1 ]

Species Clostridiales [F-3][G-1] bacterium HMT 876 [ 1, 1, 1 ]

Family Eubacteriaceae [XV] [ 2, 2, 2 ]

Genus Eubacterium [ 1, 1, 1 ]

Species Eubacterium limosum [ 1, 1, 1 ]

Genus Pseudoramibacter [ 1, 1, 1 ]

Species Pseudoramibacter alactolyticus [ 1, 1, 1 ]

Family Lachnospiraceae [XIV] [ 32, 18, 43 ]

Genus Butyrivibrio [ 3, 0, 3 ]

Species Butyrivibrio sp. HMT 080 [ 1, 0, 1 ]

Species Butyrivibrio sp. HMT 090 [ 1, 0, 1 ]

Species Butyrivibrio sp. HMT 455 [ 1, 0, 1 ]

Genus Catonella [ 3, 1, 4 ]

Species Catonella morbi [ 1, 1, 2 ]

Species Catonella sp. HMT 164 [ 1, 0, 1 ]

Species Catonella sp. HMT 451 [ 1, 0, 1 ]

Genus Johnsonella [ 2, 1, 2 ]

Species Johnsonella ignava [ 1, 1, 1 ]

Species Johnsonella sp. HMT 166 [ 1, 0, 1 ]

Genus Lachnoanaerobaculum [ 6, 5, 9 ]

Species Lachnoanaerobaculum orale [ 1, 1, 2 ]

Species Lachnoanaerobaculum saburreum [ 1, 2, 2 ]

Species Lachnoanaerobaculum sp. HMT 083 [ 1, 1, 2 ]

Species Lachnoanaerobaculum sp. HMT 089 [ 1, 0, 1 ]

Species Lachnoanaerobaculum sp. HMT 496 [ 1, 0, 1 ]

Species Lachnoanaerobaculum umeaense [ 1, 1, 1 ]

Genus Lachnospiraceae [G-10] [ 1, 0, 1 ]

Species Lachnospiraceae [G-10] bacterium HMT 094 [ 1, 0, 1 ]

Genus Lachnospiraceae [G-2] [ 2, 2, 2 ]

Species Lachnospiraceae [G-2] bacterium HMT 088 [ 1, 0, 1 ]

Species Lachnospiraceae [G-2] bacterium HMT 096 [ 1, 2, 1 ]

Genus Lachnospiraceae [G-3] [ 1, 0, 1 ]

Species Lachnospiraceae [G-3] bacterium HMT 100 [ 1, 0, 1 ]

Genus Lachnospiraceae [G-7] [ 2, 0, 2 ]

Species Lachnospiraceae [G-7] bacterium HMT 086 [ 1, 0, 1 ]

Species Lachnospiraceae [G-7] bacterium HMT 163 [ 1, 0, 1 ]

Genus Lachnospiraceae [G-8] [ 1, 1, 2 ]

Species Lachnospiraceae [G-8] bacterium HMT 500 [ 1, 1, 2 ]

Genus Lachnospiraceae [G-9] [ 1, 0, 1 ]

Species Lachnospiraceae [G-9] bacterium HMT 924 [ 1, 0, 1 ]

Genus Oribacterium [ 5, 6, 11 ]

Species Oribacterium asaccharolyticum [ 1, 1, 2 ]

Species Oribacterium parvum [ 1, 1, 2 ]

Species Oribacterium sinus [ 1, 1, 1 ]

Species Oribacterium sp. HMT 078 [ 1, 2, 4 ]

Species Oribacterium sp. HMT 102 [ 1, 1, 2 ]

Genus Shuttleworthia [ 1, 1, 1 ]

Species Shuttleworthia satelles [ 1, 1, 1 ]

Genus Stomatobaculum [ 4, 1, 4 ]

Species Stomatobaculum longum [ 1, 1, 1 ]

Species Stomatobaculum sp. HMT 097 [ 1, 0, 1 ]

Species Stomatobaculum sp. HMT 373 [ 1, 0, 1 ]

Species Stomatobaculum sp. HMT 910 [ 1, 0, 1 ]

Family Peptococcaceae [ 2, 0, 3 ]

Genus Peptococcus [ 2, 0, 3 ]

Species Peptococcus sp. HMT 167 [ 1, 0, 2 ]

Species Peptococcus sp. HMT 168 [ 1, 0, 1 ]

Family Peptoniphilaceae [ 21, 28, 31 ]

Genus Anaerococcus [ 7, 6, 11 ]

Species Anaerococcus lactolyticus [ 1, 1, 1 ]

Species Anaerococcus octavius [ 1, 2, 5 ]

Species Anaerococcus prevotii [ 1, 2, 1 ]

Species Anaerococcus sp. HMT 290 [ 1, 0, 1 ]

Species Anaerococcus sp. HMT 294 [ 1, 0, 1 ]

Species Anaerococcus sp. HMT 295 [ 1, 0, 1 ]

Species Anaerococcus tetradius [ 1, 1, 1 ]

Genus Finegoldia [ 1, 6, 2 ]

Species Finegoldia magna [ 1, 6, 2 ]

Genus Parvimonas [ 3, 3, 6 ]

Species Parvimonas micra [ 1, 1, 3 ]

Species Parvimonas sp. HMT 110 [ 1, 1, 2 ]

Species Parvimonas sp. HMT 393 [ 1, 1, 1 ]

Genus Peptoniphilaceae [G-1] [ 1, 1, 2 ]

Species Peptoniphilaceae [G-1] bacterium HMT 113 [ 1, 1, 2 ]

Genus Peptoniphilaceae [G-2] [ 1, 0, 1 ]

Species Peptoniphilaceae [G-2] bacterium HMT 790 [ 1, 0, 1 ]

Genus Peptoniphilaceae [G-3] [ 1, 1, 1 ]

Species Peptoniphilaceae [G-3] bacterium HMT 929 [ 1, 1, 1 ]

Genus Peptoniphilus [ 7, 11, 8 ]

Species Peptoniphilus asaccharolyticus [ 1, 1, 1 ]

Species Peptoniphilus harei [ 1, 3, 1 ]

Species Peptoniphilus indolicus [ 1, 1, 1 ]

Species Peptoniphilus lacrimalis [ 1, 3, 2 ]

Species Peptoniphilus sp. HMT 187 [ 1, 1, 1 ]

Species Peptoniphilus sp. HMT 375 [ 1, 1, 1 ]

Species Peptoniphilus sp. HMT 386 [ 1, 1, 1 ]

Family Peptostreptococcaceae [XI] [ 26, 17, 29 ]

Genus Filifactor [ 1, 1, 1 ]

Species Filifactor alocis [ 1, 1, 1 ]

Genus Mogibacterium [ 5, 4, 5 ]

Species Mogibacterium diversum [ 1, 1, 1 ]

Species Mogibacterium neglectum [ 1, 0, 1 ]

Species Mogibacterium pumilum [ 1, 1, 1 ]

Species Mogibacterium timidum [ 1, 2, 1 ]

Species Mogibacterium vescum [ 1, 0, 1 ]

Genus Peptostreptococcaceae [XI][G-1] [ 3, 2, 3 ]

Species Peptostreptococcaceae [XI][G-1] bacterium HMT 383 [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-1] [Eubacterium] infirmum [ 1, 1, 1 ]

Species Peptostreptococcaceae [XI][G-1] [Eubacterium] sulci [ 1, 1, 1 ]

Genus Peptostreptococcaceae [XI][G-2] [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-2] bacterium HMT 091 [ 1, 0, 1 ]

Genus Peptostreptococcaceae [XI][G-3] [ 2, 0, 2 ]

Species Peptostreptococcaceae [XI][G-3] bacterium HMT 495 [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-3] bacterium HMT 950 [ 1, 0, 1 ]

Genus Peptostreptococcaceae [XI][G-4] [ 2, 0, 2 ]

Species Peptostreptococcaceae [XI][G-4] bacterium HMT 103 [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-4] bacterium HMT 369 [ 1, 0, 1 ]

Genus Peptostreptococcaceae [XI][G-5] [ 2, 1, 2 ]

Species Peptostreptococcaceae [XI][G-5] bacterium HMT 493 [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-5] [Eubacterium] saphenum [ 1, 1, 1 ]

Genus Peptostreptococcaceae [XI][G-6] [ 2, 2, 2 ]

Species Peptostreptococcaceae [XI][G-6] [Eubacterium] minutum [ 1, 1, 1 ]

Species Peptostreptococcaceae [XI][G-6] [Eubacterium] nodatum [ 1, 1, 1 ]

Genus Peptostreptococcaceae [XI][G-7] [ 4, 2, 6 ]

Species Peptostreptococcaceae [XI][G-7] bacterium HMT 081 [ 1, 1, 2 ]

Species Peptostreptococcaceae [XI][G-7] bacterium HMT 922 [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-7] [Eubacterium] yurii subsp. schtitka [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-7] [Eubacterium] yurii subsps. yurii & margaretiae [ 1, 1, 2 ]

Genus Peptostreptococcaceae [XI][G-8] [ 1, 0, 1 ]

Species Peptostreptococcaceae [XI][G-8] bacterium HMT 382 [ 1, 0, 1 ]

Genus Peptostreptococcaceae [XI][G-9] [ 1, 1, 1 ]

Species Peptostreptococcaceae [XI][G-9] [Eubacterium] brachy [ 1, 1, 1 ]

Genus Peptostreptococcus [ 2, 4, 3 ]

Species Peptostreptococcus anaerobius [ 1, 3, 1 ]

Species Peptostreptococcus stomatis [ 1, 1, 2 ]

Family Ruminococcaceae [ 5, 1, 5 ]

Genus Fastidiosipila [ 1, 1, 1 ]

Species Fastidiosipila sanguinis [ 1, 1, 1 ]

Genus Ruminococcaceae [G-1] [ 1, 0, 1 ]

Species Ruminococcaceae [G-1] bacterium HMT 075 [ 1, 0, 1 ]

Genus Ruminococcaceae [G-2] [ 1, 0, 1 ]

Species Ruminococcaceae [G-2] bacterium HMT 085 [ 1, 0, 1 ]

Genus Ruminococcaceae [G-3] [ 2, 0, 2 ]

Species Ruminococcaceae [G-3] bacterium HMT 366 [ 1, 0, 1 ]

Species Ruminococcaceae [G-3] bacterium HMT 381 [ 1, 0, 1 ]

Family Syntrophomonadaceae [VIII] [ 1, 0, 1 ]

Genus Syntrophomonadaceae [VIII][G-1] [ 1, 0, 1 ]

Species Syntrophomonadaceae [VIII][G-1] bacterium HMT 435 [ 1, 0, 1 ]

Class Erysipelotrichia [ 6, 5, 6 ]

Order Erysipelotrichales [ 6, 5, 6 ]

Family Erysipelotrichaceae [ 6, 5, 6 ]

Genus Bulleidia [ 1, 1, 1 ]

Species Bulleidia extructa [ 1, 1, 1 ]

Genus Eggerthia [ 1, 1, 1 ]

Species Eggerthia catenaformis [ 1, 1, 1 ]

Genus Erysipelothrix [ 1, 1, 1 ]

Species Erysipelothrix tonsillarum [ 1, 1, 1 ]

Genus Erysipelotrichaceae [G-1] [ 2, 0, 2 ]

Species Erysipelotrichaceae [G-1] bacterium HMT 904 [ 1, 0, 1 ]

Species Erysipelotrichaceae [G-1] bacterium HMT 905 [ 1, 0, 1 ]

Genus Solobacterium [ 1, 2, 1 ]

Species Solobacterium moorei [ 1, 2, 1 ]

Class Mollicutes [ 11, 17, 11 ]

Order Mollicutes [O-1] [ 1, 0, 1 ]

Family Mollicutes [F-1] [ 1, 0, 1 ]

Genus Mollicutes [G-1] [ 1, 0, 1 ]

Species Mollicutes [G-1] bacterium HMT 504 [ 1, 0, 1 ]

Order Mollicutes [O-2] [ 1, 0, 1 ]

Family Mollicutes [F-2] [ 1, 0, 1 ]

Genus Mollicutes [G-2] [ 1, 0, 1 ]

Species Mollicutes [G-2] bacterium HMT 906 [ 1, 0, 1 ]

Order Mycoplasmatales [ 9, 17, 9 ]

Family Mycoplasmataceae [ 9, 17, 9 ]

Genus Mycoplasma [ 9, 17, 9 ]

Species Mycoplasma buccale [ 1, 0, 1 ]

Species Mycoplasma faucium [ 1, 0, 1 ]

Species Mycoplasma fermentans [ 1, 3, 1 ]

Species Mycoplasma genitalium [ 1, 6, 1 ]

Species Mycoplasma hominis [ 1, 2, 1 ]

Species Mycoplasma lipophilum [ 1, 0, 1 ]

Species Mycoplasma orale [ 1, 1, 1 ]

Species Mycoplasma pneumoniae [ 1, 4, 1 ]

Species Mycoplasma salivarium [ 1, 1, 1 ]

Class Negativicutes [ 53, 36, 84 ]

Order Selenomonadales [ 29, 19, 45 ]

Family Selenomonadaceae [ 29, 19, 45 ]

Genus Centipeda [ 1, 1, 1 ]

Species Centipeda periodontii [ 1, 1, 1 ]

Genus Mitsuokella [ 3, 2, 5 ]

Species Mitsuokella multacida [ 1, 1, 1 ]

Species Mitsuokella sp. HMT 131 [ 1, 1, 2 ]

Species Mitsuokella sp. HMT 521 [ 1, 0, 2 ]

Genus Selenomonas [ 25, 16, 39 ]

Species Selenomonas artemidis [ 1, 2, 3 ]

Species Selenomonas dianae [ 1, 0, 3 ]

Species Selenomonas flueggei [ 1, 1, 2 ]

Species Selenomonas infelix [ 1, 1, 1 ]

Species Selenomonas noxia [ 1, 2, 2 ]

Species Selenomonas sp. HMT 126 [ 1, 1, 2 ]

Species Selenomonas sp. HMT 133 [ 1, 1, 1 ]

Species Selenomonas sp. HMT 134 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 136 [ 1, 1, 2 ]

Species Selenomonas sp. HMT 137 [ 1, 1, 1 ]

Species Selenomonas sp. HMT 138 [ 1, 1, 1 ]

Species Selenomonas sp. HMT 146 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 149 [ 1, 1, 2 ]

Species Selenomonas sp. HMT 388 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 442 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 478 [ 1, 1, 2 ]

Species Selenomonas sp. HMT 479 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 481 [ 1, 0, 2 ]

Species Selenomonas sp. HMT 501 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 892 [ 1, 1, 1 ]

Species Selenomonas sp. HMT 919 [ 1, 0, 2 ]

Species Selenomonas sp. HMT 920 [ 1, 1, 1 ]

Species Selenomonas sp. HMT 936 [ 1, 0, 1 ]

Species Selenomonas sp. HMT 937 [ 1, 0, 1 ]

Species Selenomonas sputigena [ 1, 1, 3 ]

Order Veillonellales [ 24, 17, 39 ]

Family Veillonellaceae [ 24, 17, 39 ]

Genus Anaeroglobus [ 1, 1, 1 ]

Species Anaeroglobus geminatus [ 1, 1, 1 ]

Genus Dialister [ 4, 3, 5 ]

Species Dialister invisus [ 1, 1, 2 ]

Species Dialister micraerophilus [ 1, 1, 1 ]

Species Dialister pneumosintes [ 1, 1, 1 ]

Species Dialister sp. HMT 119 [ 1, 0, 1 ]

Genus Megasphaera [ 3, 1, 5 ]

Species Megasphaera micronuciformis [ 1, 1, 2 ]

Species Megasphaera sp. HMT 123 [ 1, 0, 2 ]

Species Megasphaera sp. HMT 841 [ 1, 0, 1 ]

Genus Veillonella [ 7, 12, 16 ]

Species Veillonella atypica [ 1, 3, 2 ]

Species Veillonella denticariosi [ 1, 1, 1 ]

Species Veillonella dispar [ 1, 2, 2 ]

Species Veillonella parvula [ 1, 4, 5 ]

Species Veillonella rogosae [ 1, 1, 2 ]

Species Veillonella sp. HMT 780 [ 1, 1, 2 ]

Species Veillonella sp. HMT 917 [ 1, 0, 2 ]

Genus Veillonellaceae [G-1] [ 9, 0, 12 ]

Species Veillonellaceae [G-1] bacterium HMT 129 [ 1, 0, 1 ]

Species Veillonellaceae [G-1] bacterium HMT 132 [ 1, 0, 1 ]

Species Veillonellaceae [G-1] bacterium HMT 135 [ 1, 0, 2 ]

Species Veillonellaceae [G-1] bacterium HMT 145 [ 1, 0, 1 ]

Species Veillonellaceae [G-1] bacterium HMT 148 [ 1, 0, 1 ]

Species Veillonellaceae [G-1] bacterium HMT 150 [ 1, 0, 2 ]

Species Veillonellaceae [G-1] bacterium HMT 155 [ 1, 0, 2 ]

Species Veillonellaceae [G-1] bacterium HMT 483 [ 1, 0, 1 ]

Species Veillonellaceae [G-1] bacterium HMT 918 [ 1, 0, 1 ]

Phylum Fusobacteria [ 37, 69, 46 ]

Class Fusobacteriia [ 37, 69, 46 ]

Order Fusobacteriales [ 37, 69, 46 ]

Family Fusobacteriaceae [ 14, 48, 21 ]

Genus Fusobacterium [ 14, 48, 21 ]

Species Fusobacterium gonidiaformans [ 1, 2, 1 ]

Species Fusobacterium hwasookii [ 1, 4, 1 ]

Species Fusobacterium naviforme [ 1, 3, 1 ]

Species Fusobacterium necrophorum [ 1, 5, 1 ]

Species Fusobacterium nucleatum subsp. animalis [ 1, 10, 2 ]

Species Fusobacterium nucleatum subsp. nucleatum [ 1, 4, 1 ]

Species Fusobacterium nucleatum subsp. polymorphum [ 1, 7, 1 ]

Species Fusobacterium nucleatum subsp. vincentii [ 1, 5, 4 ]

Species Fusobacterium periodonticum [ 1, 4, 2 ]

Species Fusobacterium sp. HMT 203 [ 1, 2, 3 ]

Species Fusobacterium sp. HMT 204 [ 1, 0, 1 ]

Species Fusobacterium sp. HMT 205 [ 1, 0, 1 ]

Species Fusobacterium sp. HMT 248 [ 1, 1, 1 ]

Species Fusobacterium sp. HMT 370 [ 1, 1, 1 ]

Family Leptotrichiaceae [ 23, 21, 25 ]

Genus Leptotrichia [ 21, 19, 23 ]

Species Leptotrichia buccalis [ 1, 1, 1 ]

Species Leptotrichia goodfellowii [ 1, 2, 1 ]

Species Leptotrichia hofstadii [ 1, 2, 1 ]

Species Leptotrichia hongkongensis [ 1, 1, 1 ]

Species Leptotrichia shahii [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 212 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 215 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 217 [ 1, 0, 1 ]

Species Leptotrichia sp. HMT 218 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 219 [ 1, 0, 1 ]

Species Leptotrichia sp. HMT 221 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 223 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 225 [ 1, 1, 2 ]

Species Leptotrichia sp. HMT 392 [ 1, 0, 1 ]

Species Leptotrichia sp. HMT 417 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 463 [ 1, 0, 1 ]

Species Leptotrichia sp. HMT 498 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 847 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 879 [ 1, 1, 1 ]

Species Leptotrichia sp. HMT 909 [ 1, 0, 1 ]

Species Leptotrichia wadei [ 1, 2, 2 ]

Genus Leptotrichiaceae [G-1] [ 0, 0, 0 ]

Genus Sneathia [ 2, 2, 2 ]

Species Sneathia amnii [Not Validly Published] [ 1, 1, 1 ]

Species Sneathia sanguinegens [ 1, 1, 1 ]

Phylum Gracilibacteria (GN02) [ 5, 2, 4 ]

Class Gracilibacteria (GN02) [C-1] [ 4, 2, 3 ]

Order Gracilibacteria (GN02) [O-1] [ 4, 2, 3 ]

Family Gracilibacteria (GN02) [F-1] [ 4, 2, 3 ]

Genus Gracilibacteria (GN02) [G-1] [ 2, 0, 2 ]

Species Gracilibacteria (GN02) [G-1] bacterium HMT 871 [ 1, 0, 1 ]

Species Gracilibacteria (GN02) [G-1] bacterium HMT 872 [ 1, 0, 1 ]

Genus Gracilibacteria (GN02) [G-3] [ 1, 1, 1 ]

Species Gracilibacteria (GN02) [G-3] bacterium HMT 996 [ 1, 1, 1 ]

Genus Gracilibacteria (GN02) [G-4] [ 1, 1, 0 ]

Species Gracilibacteria (GN02) [G-4] bacterium HMT 997 [ 1, 1, 0 ]

Class Gracilibacteria (GN02) [C-2] [ 1, 0, 1 ]

Order Gracilibacteria (GN02) [O-2] [ 1, 0, 1 ]

Family Gracilibacteria (GN02) [F-2] [ 1, 0, 1 ]

Genus Gracilibacteria (GN02) [G-2] [ 1, 0, 1 ]

Species Gracilibacteria (GN02) [G-2] bacterium HMT 873 [ 1, 0, 1 ]

Phylum Lentisphaerae [ 1, 1, 0 ]

Class Lentisphaeria [ 1, 1, 0 ]

Order Victivallales [ 1, 1, 0 ]

Family Victivallaceae [ 1, 1, 0 ]

Genus Victivallales [G-1] [ 1, 1, 0 ]

Species Victivallales [G-1] bacterium HMT- 998 [ 1, 1, 0 ]

Phylum Proteobacteria [ 141, 449, 174 ]

Class Alphaproteobacteria [ 24, 35, 24 ]

Order Alphaproteobacteria [O-1] [ 1, 1, 1 ]

Family Alphaproteobacteria [F-1] [ 1, 1, 1 ]

Genus Micavibrio [ 1, 1, 1 ]

Species Micavibrio aeruginosavorus [ 1, 1, 1 ]

Order Caulobacterales [ 2, 2, 2 ]

Family Caulobacteraceae [ 2, 2, 2 ]

Genus Brevundimonas [ 1, 2, 1 ]

Species Brevundimonas diminuta [ 1, 2, 1 ]

Genus Caulobacter [ 1, 0, 1 ]

Species Caulobacter sp. HMT 002 [ 1, 0, 1 ]

Order Rhizobiales [ 9, 16, 9 ]

Family Bartonellaceae [ 1, 1, 1 ]

Genus Bartonella [ 1, 1, 1 ]

Species Bartonella schoenbuchensis [ 1, 1, 1 ]

Family Bradyrhizobiaceae [ 4, 4, 4 ]

Genus Afipia [ 2, 1, 2 ]

Species Afipia broomeae [ 1, 1, 1 ]

Species Afipia sp. genotype 4 [ 1, 0, 1 ]

Genus Bosea [ 1, 1, 1 ]

Species Bosea vestrisii [ 1, 1, 1 ]

Genus Bradyrhizobium [ 1, 2, 1 ]

Species Bradyrhizobium elkanii [ 1, 2, 1 ]

Family Brucellaceae [ 1, 2, 1 ]

Genus Ochrobactrum [ 1, 2, 1 ]

Species Ochrobactrum anthropi [ 1, 2, 1 ]

Family Phyllobacteriaceae [ 1, 0, 1 ]

Genus Defluvibacter [ 1, 0, 1 ]

Species Defluvibacter lusatiensis [ 1, 0, 1 ]

Family Rhizobiaceae [ 2, 9, 2 ]

Genus Agrobacterium [ 1, 6, 1 ]

Species Agrobacterium tumefaciens [ 1, 6, 1 ]

Genus Mesorhizobium [ 1, 3, 1 ]

Species Mesorhizobium loti [ 1, 3, 1 ]

Order Rhodobacterales [ 3, 9, 3 ]

Family Rhodobacteraceae [ 3, 9, 3 ]

Genus Haematobacter [ 1, 1, 1 ]

Species Haematobacter missouriensis [ 1, 1, 1 ]

Genus Paracoccus [ 1, 1, 1 ]

Species Paracoccus yeei [ 1, 1, 1 ]

Genus Rhodobacter [ 1, 7, 1 ]

Species Rhodobacter capsulatus [ 1, 7, 1 ]

Order Rhodospirillales [ 1, 1, 1 ]

Family Acetobacteraceae [ 1, 1, 1 ]

Genus Roseomonas [ 1, 1, 1 ]

Species Roseomonas gilardii [ 1, 1, 1 ]

Order Rhodospirillales [ 1, 1, 1 ]

Family Rhodospirillales [F-1] [ 1, 1, 1 ]

Genus Enhydrobacter [ 1, 1, 1 ]

Species Enhydrobacter aerosaccus [ 1, 1, 1 ]

Order Rhodospirillales [ 1, 1, 1 ]

Family Acetobacteraceae [ 1, 1, 1 ]

Genus Roseomonas [ 1, 1, 1 ]

Species Roseomonas mucosa [ 1, 1, 1 ]

Order Sphingomonadales [ 6, 4, 6 ]

Family Erythrobacteraceae [ 1, 1, 1 ]

Genus Erythromicrobium [ 1, 1, 1 ]

Species Erythromicrobium ramosum [ 1, 1, 1 ]

Family Sphingomonadaceae [ 5, 3, 5 ]

Genus Novosphingobium [ 1, 1, 1 ]

Species Novosphingobium panipatense [ 1, 1, 1 ]

Genus Porphyrobacter [ 1, 1, 1 ]

Species Porphyrobacter tepidarius [ 1, 1, 1 ]

Genus Sphingomonas [ 3, 1, 3 ]

Species Sphingomonas echinoides [ 1, 1, 1 ]

Species Sphingomonas sp. HMT 004 [ 1, 0, 1 ]

Species Sphingomonas sp. HMT 006 [ 1, 0, 1 ]

Class Betaproteobacteria [ 50, 77, 61 ]

Order Burkholderiales [ 18, 33, 21 ]

Family Alcaligenaceae [ 2, 7, 2 ]

Genus Achromobacter [ 1, 5, 1 ]

Species Achromobacter xylosoxidans [ 1, 5, 1 ]

Genus Bordetella [ 1, 2, 1 ]

Species Bordetella pertussis [ 1, 2, 1 ]

Family Burkholderiaceae [ 5, 8, 6 ]

Genus Burkholderia [ 1, 2, 1 ]

Species Burkholderia cepacia [ 1, 2, 1 ]

Genus Cupriavidus [ 1, 1, 1 ]

Species Cupriavidus gilardii [ 1, 1, 1 ]

Genus Lautropia [ 1, 1, 2 ]

Species Lautropia mirabilis [ 1, 1, 2 ]

Genus Ralstonia [ 2, 4, 2 ]

Species Ralstonia pickettii [ 1, 4, 1 ]

Species Ralstonia sp. HMT 406 [ 1, 0, 1 ]

Family Comamonadaceae [ 8, 15, 10 ]

Genus Comamonas [ 1, 4, 1 ]

Species Comamonas testosteroni [ 1, 4, 1 ]

Genus Delftia [ 1, 4, 2 ]

Species Delftia acidovorans [ 1, 4, 2 ]

Genus Leptothrix [ 2, 0, 2 ]

Species Leptothrix sp. HMT 025 [ 1, 0, 1 ]

Species Leptothrix sp. HMT 266 [ 1, 0, 1 ]

Genus Ottowia [ 1, 1, 2 ]

Species Ottowia sp. HMT 894 [ 1, 1, 2 ]

Genus Schlegelella [ 2, 3, 2 ]

Species Schlegelella aquatica [ 1, 0, 1 ]

Species Schlegelella thermodepolymerans [ 1, 3, 1 ]

Genus Variovorax [ 1, 3, 1 ]

Species Variovorax paradoxus [ 1, 3, 1 ]

Family Commamonadaceae [ 1, 1, 1 ]

Genus Acidovorax [ 1, 1, 1 ]

Species Acidovorax temperans [ 1, 1, 1 ]

Family Commamonadaceae [ 1, 1, 1 ]

Genus Acidovorax [ 1, 1, 1 ]

Species Acidovorax caeni [ 1, 1, 1 ]

Family Commamonadaceae [ 1, 1, 1 ]

Genus Acidovorax [ 1, 1, 1 ]

Species Acidovorax ebreus [ 1, 1, 1 ]

Order Neisseriales [ 31, 44, 39 ]

Family Neisseriaceae [ 31, 44, 39 ]

Genus Eikenella [ 2, 2, 3 ]

Species Eikenella corrodens [ 1, 2, 2 ]

Species Eikenella sp. HMT 011 [ 1, 0, 1 ]

Genus Kingella [ 6, 4, 9 ]

Species Kingella denitrificans [ 1, 1, 1 ]

Species Kingella kingae [ 1, 2, 2 ]

Species Kingella oralis [ 1, 1, 1 ]

Species Kingella sp. HMT 012 [ 1, 0, 3 ]

Species Kingella sp. HMT 459 [ 1, 0, 1 ]

Species Kingella sp. HMT 932 [ 1, 0, 1 ]

Genus Neisseria [ 20, 37, 24 ]

Species Neisseria bacilliformis [ 1, 1, 3 ]

Species Neisseria cinerea [ 1, 1, 1 ]

Species Neisseria elongata [ 1, 1, 1 ]

Species Neisseria flava [ 1, 0, 1 ]

Species Neisseria flavescens [ 1, 2, 1 ]

Species Neisseria gonorrhoeae [ 1, 3, 1 ]

Species Neisseria lactamica [ 1, 3, 1 ]

Species Neisseria macacae [ 1, 1, 1 ]

Species Neisseria meningitidis [ 1, 13, 1 ]

Species Neisseria mucosa [ 1, 2, 1 ]

Species Neisseria oralis [ 1, 1, 2 ]

Species Neisseria perflava [ 1, 2, 1 ]

Species Neisseria polysaccharea [ 1, 1, 1 ]

Species Neisseria sicca [ 1, 2, 1 ]

Species Neisseria sp. HMT 018 [ 1, 0, 1 ]

Species Neisseria sp. HMT 020 [ 1, 1, 2 ]

Species Neisseria sp. HMT 499 [ 1, 0, 1 ]

Species Neisseria sp. HMT 523 [ 1, 0, 1 ]

Species Neisseria subflava [ 1, 1, 1 ]

Species Neisseria weaveri [ 1, 2, 1 ]

Genus Neisseriaceae [G-1] [ 1, 0, 1 ]

Species Neisseriaceae [G-1] bacterium HMT 327 [ 1, 0, 1 ]

Genus Neisseriaceae [G-1] [ 1, 0, 1 ]

Species Neisseriaceae [G-1] bacterium HMT 174 [ 1, 0, 1 ]

Genus Simonsiella [ 1, 1, 1 ]

Species Simonsiella muelleri [ 1, 1, 1 ]

Order Rhodocyclales [ 1, 0, 1 ]

Family Rhodocyclaceae [ 1, 0, 1 ]

Genus Rhodocyclus [ 1, 0, 1 ]

Species Rhodocyclus sp. HMT 028 [ 1, 0, 1 ]

Class Deltaproteobacteria [ 5, 4, 5 ]

Order Bdellovibrionales [ 1, 0, 1 ]

Family Bdellovibrionaceae [ 1, 0, 1 ]

Genus Bdellovibrio [ 1, 0, 1 ]

Species Bdellovibrio sp. HMT 039 [ 1, 0, 1 ]

Order Desulfobacterales [ 1, 2, 1 ]

Family Desulfobulbaceae [ 1, 2, 1 ]

Genus Desulfobulbus [ 1, 2, 1 ]

Species Desulfobulbus sp. HMT 041 [ 1, 2, 1 ]

Order Desulfovibrionales [ 3, 2, 3 ]

Family Desulfomicrobiaceae [ 1, 1, 1 ]

Genus Desulfomicrobium [ 1, 1, 1 ]

Species Desulfomicrobium orale [ 1, 1, 1 ]

Family Desulfovibrionaceae [ 2, 1, 2 ]

Genus Desulfovibrio [ 2, 1, 2 ]

Species Desulfovibrio fairfieldensis [ 1, 1, 1 ]

Species Desulfovibrio sp. HMT 040 [ 1, 0, 1 ]

Class Epsilonproteobacteria [ 9, 27, 11 ]

Order Campylobacterales [ 9, 27, 11 ]

Family Campylobacteraceae [ 8, 15, 10 ]

Genus Campylobacter [ 8, 15, 10 ]

Species Campylobacter concisus [ 1, 5, 1 ]

Species Campylobacter curvus [ 1, 2, 2 ]

Species Campylobacter gracilis [ 1, 1, 1 ]

Species Campylobacter rectus [ 1, 1, 2 ]

Species Campylobacter showae [ 1, 3, 1 ]

Species Campylobacter sp. HMT 044 [ 1, 0, 1 ]

Species Campylobacter sputorum [ 1, 1, 1 ]

Species Campylobacter ureolyticus [ 1, 2, 1 ]

Family Helicobacteraceae [ 1, 12, 1 ]

Genus Helicobacter [ 1, 12, 1 ]

Species Helicobacter pylori [ 1, 12, 1 ]

Class Gammaproteobacteria [ 53, 306, 73 ]

Order Cardiobacteriales [ 2, 2, 3 ]

Family Cardiobacteriaceae [ 2, 2, 3 ]

Genus Cardiobacterium [ 2, 2, 3 ]

Species Cardiobacterium hominis [ 1, 1, 2 ]

Species Cardiobacterium valvarum [ 1, 1, 1 ]

Order Enterobacterales [ 10, 99, 13 ]

Family Enterobacteriaceae [ 9, 98, 12 ]

Genus Cronobacter [ 1, 5, 1 ]

Species Cronobacter sakazakii [ 1, 5, 1 ]

Genus Enterobacter [ 2, 3, 2 ]

Species Enterobacter cancerogenus [ 1, 2, 1 ]

Species Enterobacter hormaechei [ 1, 1, 1 ]

Genus Escherichia [ 1, 52, 1 ]

Species Escherichia coli [ 1, 52, 1 ]

Genus Klebsiella [ 2, 7, 4 ]

Species Klebsiella aerogenes [ 1, 1, 1 ]

Species Klebsiella pneumoniae [ 1, 6, 3 ]

Genus Kluyvera [ 1, 1, 2 ]

Species Kluyvera ascorbata [ 1, 1, 2 ]

Genus Proteus [ 1, 5, 1 ]

Species Proteus mirabilis [ 1, 5, 1 ]

Genus Yersinia [ 1, 25, 1 ]

Species Yersinia pestis [ 1, 25, 1 ]

Family Yersiniaceae [ 1, 1, 1 ]

Genus Serratia [ 1, 1, 1 ]

Species Serratia marcescens [ 1, 1, 1 ]

Order Pasteurellales [ 21, 140, 33 ]

Family Pasteurellaceae [ 21, 140, 33 ]

Genus Aggregatibacter [ 9, 88, 12 ]

Species Aggregatibacter actinomycetemcomitans [ 1, 81, 2 ]

Species Aggregatibacter aphrophilus [ 1, 3, 2 ]

Species Aggregatibacter paraphrophilus [ 1, 1, 1 ]

Species Aggregatibacter segnis [ 1, 1, 1 ]

Species Aggregatibacter sp. HMT 458 [ 1, 1, 1 ]

Species Aggregatibacter sp. HMT 512 [ 1, 0, 1 ]

Species Aggregatibacter sp. HMT 513 [ 1, 1, 1 ]

Species Aggregatibacter sp. HMT 898 [ 1, 0, 2 ]

Species Aggregatibacter sp. HMT 949 [ 1, 0, 1 ]

Genus Haemophilus [ 12, 52, 21 ]

Species Haemophilus aegyptius [ 1, 1, 1 ]

Species Haemophilus ducreyi [ 1, 1, 1 ]

Species Haemophilus haemolyticus [ 1, 8, 2 ]

Species Haemophilus influenzae [ 1, 24, 3 ]

Species Haemophilus parahaemolyticus [ 1, 1, 2 ]

Species Haemophilus parainfluenzae [ 1, 12, 2 ]

Species Haemophilus paraphrohaemolyticus [ 1, 1, 2 ]

Species Haemophilus pittmaniae [ 1, 1, 1 ]

Species Haemophilus sp. HMT 036 [ 1, 2, 2 ]

Species Haemophilus sp. HMT 259 [ 1, 0, 2 ]

Species Haemophilus sp. HMT 908 [ 1, 0, 2 ]

Species Haemophilus sputorum [ 1, 1, 1 ]

Genus Terrahaemophilus [ 0, 0, 0 ]

Order Pseudomonadales [ 18, 57, 22 ]

Family Moraxellaceae [ 11, 27, 15 ]

Genus Acinetobacter [ 6, 11, 6 ]

Species Acinetobacter baumannii [ 1, 7, 1 ]

Species Acinetobacter johnsonii [ 1, 1, 1 ]

Species Acinetobacter junii [ 1, 1, 1 ]

Species Acinetobacter lwoffii [ 1, 1, 1 ]

Species Acinetobacter radioresistens [ 1, 1, 1 ]

Species Acinetobacter sp. HMT 408 [ 1, 0, 1 ]

Genus Moraxella [ 5, 16, 9 ]

Species Moraxella catarrhalis [ 1, 13, 2 ]

Species Moraxella lincolnii [ 1, 1, 3 ]

Species Moraxella nonliquefaciens [ 1, 1, 2 ]

Species Moraxella osloensis [ 1, 1, 1 ]

Species Moraxella sp. HMT 276 [ 1, 0, 1 ]

Family Pseudomonadaceae [ 7, 30, 7 ]

Genus Pseudomonas [ 7, 30, 7 ]

Species Pseudomonas aeruginosa [ 1, 11, 1 ]

Species Pseudomonas fluorescens [ 1, 7, 1 ]

Species Pseudomonas luteola [ 1, 1, 1 ]

Species Pseudomonas otitidis [ 1, 1, 1 ]

Species Pseudomonas pseudoalcaligenes [ 1, 3, 1 ]

Species Pseudomonas sp. HMT 032 [ 1, 0, 1 ]

Species Pseudomonas stutzeri [ 1, 7, 1 ]

Order Xanthomonadales [ 2, 8, 2 ]

Family Xanthomonadaceae [ 2, 8, 2 ]

Genus Stenotrophomonas [ 2, 8, 2 ]

Species Stenotrophomonas maltophilia [ 1, 7, 1 ]

Species Stenotrophomonas nitritireducens [ 1, 1, 1 ]

Phylum Saccharibacteria (TM7) [ 24, 27, 21 ]

Class Saccharibacteria (TM7) [C-1] [ 24, 27, 21 ]

Order Saccharibacteria (TM7) [O-1] [ 24, 27, 21 ]

Family Saccharibacteria (TM7) [F-1] [ 23, 27, 19 ]

Genus Candidatus Saccharimonas [ 1, 1, 1 ]

Species Candidatus Saccharimonas aalborgensis [ 1, 1, 1 ]

Genus Saccharibacteria (TM7) [G-1] [ 10, 18, 9 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 346 [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 347 [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 348 [ 1, 2, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 349 [ 1, 1, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 352 [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 353 [ 1, 0, 0 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 488 [ 1, 12, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 869 [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 952 [ 1, 2, 1 ]

Species Saccharibacteria (TM7) [G-1] bacterium HMT 957 [ 1, 1, 1 ]

Genus Saccharibacteria (TM7) [G-2] [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-2] bacterium HMT 350 [ 1, 0, 1 ]

Genus Saccharibacteria (TM7) [G-3] [ 4, 0, 1 ]

Species Saccharibacteria (TM7) [G-3] bacterium HMT 351 [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-3] bacterium HMT 364 [ 1, 0, 0 ]

Species Saccharibacteria (TM7) [G-3] bacterium HMT 367 [ 1, 0, 0 ]

Species Saccharibacteria (TM7) [G-3] bacterium HMT 371 [ 1, 0, 0 ]

Genus Saccharibacteria (TM7) [G-4] [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-4] bacterium HMT 355 [ 1, 0, 1 ]

Genus Saccharibacteria (TM7) [G-6] [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-6] bacterium HMT 870 [ 1, 0, 1 ]

Genus Saccharibacteria (TM7) [G-7] [ 4, 3, 4 ]

Species Saccharibacteria (TM7) [G-7] bacterium HMT 954 [ 1, 0, 1 ]

Species Saccharibacteria (TM7) [G-7] bacterium HMT 986 [ 1, 1, 1 ]

Species Saccharibacteria (TM7) [G-7] bacterium HMT 987 [ 1, 1, 1 ]

Species Saccharibacteria (TM7) [G-7] bacterium HMT 989 [ 1, 1, 1 ]

Genus Saccharibacteria (TM7) [G-8] [ 1, 5, 1 ]

Species Saccharibacteria (TM7) [G-8] bacterium HMT 955 [ 1, 5, 1 ]

Family Saccharibacteria (TM7) [F-2] [ 1, 0, 2 ]

Genus Saccharibacteria (TM7) [G-5] [ 1, 0, 2 ]

Species Saccharibacteria (TM7) [G-5] bacterium HMT 356 [ 1, 0, 2 ]

Phylum Spirochaetes [ 50, 40, 64 ]

Class Spirochaetia [ 50, 40, 64 ]

Order Spirochaetales [ 50, 40, 64 ]

Family Spirochaetaceae [ 50, 40, 64 ]

Genus Treponema [ 50, 40, 64 ]

Species Treponema amylovorum [ 1, 0, 1 ]

Species Treponema denticola [ 1, 18, 2 ]

Species Treponema lecithinolyticum [ 1, 1, 1 ]

Species Treponema maltophilum [ 1, 1, 2 ]

Species Treponema medium [ 1, 1, 1 ]

Species Treponema pallidum [ 1, 9, 1 ]

Species Treponema parvum [ 1, 0, 1 ]

Species Treponema pectinovorum [ 1, 5, 1 ]

Species Treponema putidum [ 1, 1, 1 ]

Species Treponema socranskii [ 1, 2, 6 ]

Species Treponema sp. HMT 226 [ 1, 0, 1 ]

Species Treponema sp. HMT 227 [ 1, 0, 1 ]

Species Treponema sp. HMT 228 [ 1, 0, 1 ]

Species Treponema sp. HMT 230 [ 1, 0, 2 ]

Species Treponema sp. HMT 231 [ 1, 0, 1 ]

Species Treponema sp. HMT 232 [ 1, 0, 1 ]

Species Treponema sp. HMT 234 [ 1, 0, 1 ]

Species Treponema sp. HMT 235 [ 1, 0, 1 ]

Species Treponema sp. HMT 236 [ 1, 0, 1 ]

Species Treponema sp. HMT 237 [ 1, 0, 4 ]

Species Treponema sp. HMT 238 [ 1, 0, 1 ]

Species Treponema sp. HMT 239 [ 1, 0, 2 ]

Species Treponema sp. HMT 242 [ 1, 0, 1 ]

Species Treponema sp. HMT 246 [ 1, 0, 1 ]

Species Treponema sp. HMT 247 [ 1, 0, 1 ]

Species Treponema sp. HMT 249 [ 1, 0, 1 ]

Species Treponema sp. HMT 250 [ 1, 0, 1 ]

Species Treponema sp. HMT 251 [ 1, 0, 1 ]

Species Treponema sp. HMT 252 [ 1, 0, 1 ]

Species Treponema sp. HMT 253 [ 1, 0, 1 ]

Species Treponema sp. HMT 254 [ 1, 0, 1 ]

Species Treponema sp. HMT 256 [ 1, 0, 1 ]

Species Treponema sp. HMT 257 [ 1, 0, 1 ]

Species Treponema sp. HMT 258 [ 1, 0, 1 ]

Species Treponema sp. HMT 260 [ 1, 0, 1 ]

Species Treponema sp. HMT 262 [ 1, 0, 1 ]

Species Treponema sp. HMT 263 [ 1, 0, 1 ]

Species Treponema sp. HMT 264 [ 1, 0, 1 ]

Species Treponema sp. HMT 265 [ 1, 0, 1 ]

Species Treponema sp. HMT 268 [ 1, 0, 2 ]

Species Treponema sp. HMT 269 [ 1, 0, 1 ]

Species Treponema sp. HMT 270 [ 1, 0, 1 ]

Species Treponema sp. HMT 271 [ 1, 0, 1 ]

Species Treponema sp. HMT 490 [ 1, 0, 2 ]

Species Treponema sp. HMT 508 [ 1, 0, 1 ]

Species Treponema sp. HMT 517 [ 1, 0, 1 ]

Species Treponema sp. HMT 518 [ 1, 0, 1 ]

Species Treponema sp. HMT 927 [ 1, 0, 1 ]

Species Treponema sp. HMT 951 [ 1, 0, 1 ]

Species Treponema vincentii [ 1, 2, 1 ]

Phylum Synergistetes [ 8, 4, 15 ]

Class Synergistia [ 8, 4, 15 ]

Order Synergistales [ 8, 4, 15 ]

Family Dethiosulfovibrionaceae [ 2, 3, 4 ]

Genus Jonquetella [ 1, 2, 1 ]

Species Jonquetella anthropi [ 1, 2, 1 ]

Genus Pyramidobacter [ 1, 1, 3 ]

Species Pyramidobacter piscolens [ 1, 1, 3 ]

Family Synergistaceae [ 6, 1, 11 ]

Genus Fretibacterium [ 6, 1, 11 ]

Species Fretibacterium fastidiosum [ 1, 1, 3 ]

Species Fretibacterium sp. HMT 358 [ 1, 0, 1 ]

Species Fretibacterium sp. HMT 359 [ 1, 0, 1 ]

Species Fretibacterium sp. HMT 360 [ 1, 0, 1 ]

Species Fretibacterium sp. HMT 361 [ 1, 0, 3 ]

Species Fretibacterium sp. HMT 362 [ 1, 0, 2 ]

Phylum WPS-2 [ 1, 1, 0 ]

Class WPS-2 [C-1] [ 1, 1, 0 ]

Order WPS-2 [O-1] [ 1, 1, 0 ]

Family WPS-2 [F-1] [ 1, 1, 0 ]

Genus WPS-2 [G-1] [ 1, 1, 0 ]

Species WPS-2 [G-1] sp. HMT 999 [ 1, 1, 0 ]

* Numbers indicated in brackets at each level: [ Number of Taxa, Number of Genomes, Number of 16S rRNA RefSeqs ]

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