HOMD :: Human Oral Microbiome Database

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Taxon Description
16S rRNA RefSeq
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Proteomes
- View genomic tree based on conserved proteins
- Download All Protein Sequences Annotated from Genomes
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HOMD Information
Page: HP1

16S rRNA Refseq V15.23 Genomic RefSeq V10.1

Downloadable Data in HOMD

1.

Type	Formats
Phylogenetic tree of HOMD 16S rRNA Reference Sequences	in SVG format	in Newick format	Sequence ID Table
Phylogenetic tree of 16S rRNA gene sequences identified in HOMD genomes	in SVG format	in Newick format	Sequence ID Table
Phylogenomic tree based on conserved proteins identified from HOMD genomes	in SVG format	in Newick format	Sequence ID Table
Phylogenetic tree of ribosomal proteins identified from HOMD genomes	in SVG format	in Newick format	Sequence ID Table

2.

Batch Taxonomic Data Download:

Type	Formats
Taxon Table	Tab Delimited Text (View in browser)	Tab Delimited Text (Save to file)	MS Excel Format (Save to file)
Taxonomic Hierarchy	Tab Delimited Text (View in browser)	Tab Delimited Text Save to file)	MS Excel Format (Save to file)
Taxonomic Level	Tab Delimited Text (View in browser)	Tab Delimited Text (Save to file)	MS Excel Format (Save to file)

3.

Batch Genomic Meta Informaton Download:

Type	Formats
Sequence Meta Information	Tab Delimited Text (View in browser)	Tab Delimited Text (Save to file)	MS Excel Format (Save to file)

4.

HOMD Database Schema

5.

HOMD Database Structures:

Database	Table Structure
HOMD_taxonomy	Text	SQL
HOMD_genomes	Text	SQL
static_genome	Text	SQL
annotated_genome	Text	SQL

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