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| Taxon ID | Genus ▽ | Species | Status | Body Site | Flag | Taxon Link | Genome Link | Genome Size |
| HMT-389 | Abiotrophia | defectiva | Named | Oral | | | | 2.04 Mbps |
| HMT-874 | Absconditabacteria (SR1) [G-1] | bacterium HMT 874 | Phylotype | Oral | | | | 1.11 Mbps |
| HMT-343 | Achromobacter | xylosoxidans | Named | Unassigned | | | | 6.51 - 7.36 Mbps |
| HMT-191 | Acidipropionibacterium | acidifaciens | Named | Oral | | | | 3.02 - 3.04 Mbps |
| HMT-211 | Acidovorax | caeni | Named | Unassigned | | | | 4.15 Mbps |
| HMT-209 | Acidovorax | ebreus | Named | Unassigned | | | | 3.80 Mbps |
| HMT-216 | Acidovorax | temperans | Named | Unassigned | | | | 4.48 Mbps |
| HMT-554 | Acinetobacter | baumannii | Named | Unassigned | | | | 3.48 - 4.06 Mbps |
| HMT-297 | Acinetobacter | johnsonii | Named | Unassigned | | | | 4.08 Mbps |
| HMT-282 | Acinetobacter | junii | Named | Unassigned | | | | 3.38 Mbps |
| HMT-005 | Acinetobacter | lwoffii | Named | Unassigned | | | | 3.38 Mbps |
| HMT-010 | Acinetobacter | radioresistens | Named | Unassigned | | | | 3.21 Mbps |
| HMT-888 | Actinomyces | dentalis | Named | Oral | | | | 3.53 Mbps |
| HMT-618 | Actinomyces | gerencseriae | Named | Oral | | | | 3.42 Mbps |
| HMT-866 | Actinomyces | graevenitzii | Named | Oral | | | | 2.09 - 2.21 Mbps |
| HMT-645 | Actinomyces | israelii | Named | Oral | | | | 4.03 Mbps |
| HMT-849 | Actinomyces | johnsonii | Named | Oral | | | | 3.33 - 3.46 Mbps |
| HMT-852 | Actinomyces | massiliensis | Named | Oral | | | | 3.37 - 3.42 Mbps |
| HMT-176 | Actinomyces | naeslundii | Named | Oral | | | | 3.11 Mbps |
| HMT-708 | Actinomyces | oricola | Named | Unassigned | | | | 2.93 Mbps |
| HMT-893 | Actinomyces | oris | Named | Oral | | | | 2.87 - 3.04 Mbps |
| HMT-746 | Actinomyces | radicidentis | Named | Unassigned | | | | 3.05 Mbps |
| HMT-169 | Actinomyces | sp. HMT 169 | Unnamed | Oral | | | | 3.04 Mbps |
| HMT-170 | Actinomyces | sp. HMT 170 | Unnamed | Oral | | | | 3.14 Mbps |
| HMT-171 | Actinomyces | sp. HMT 171 | Unnamed | Oral | | | | 3.01 - 3.10 Mbps |
| HMT-175 | Actinomyces | sp. HMT 175 | Unnamed | Oral | | | | 3.13 Mbps |
| HMT-414 | Actinomyces | sp. HMT 414 | Unnamed | Oral | | | | 3.84 Mbps |
| HMT-448 | Actinomyces | sp. HMT 448 | Unnamed | Oral | | | | 2.83 Mbps |
| HMT-897 | Actinomyces | sp. HMT 897 | Unnamed | Oral | | | | 3.25 Mbps |
| HMT-179 | Actinomyces | timonensis | Named | Oral | | | | 2.93 Mbps |
| HMT-688 | Actinomyces | viscosus | Named | Oral | | | | 3.13 Mbps |
| HMT-312 | Aerococcus | viridans | Named | Unassigned | | | | 2.00 Mbps |
| HMT-559 | Afipia | broomeae | Named | Unassigned | | | | 5.26 Mbps |
| HMT-531 | Aggregatibacter | actinomycetemcomitans | Named | Oral | | | | 1.86 - 2.38 Mbps |
| HMT-545 | Aggregatibacter | aphrophilus | Named | Oral | | | | 2.26 - 2.31 Mbps |
| HMT-720 | Aggregatibacter | paraphrophilus | Named | Oral | | | | 2.41 Mbps |
| HMT-762 | Aggregatibacter | segnis | Named | Oral | | | | 2.01 Mbps |
| HMT-458 | Aggregatibacter | sp. HMT 458 | Unnamed | Oral | | | | 2.02 Mbps |
| HMT-513 | Aggregatibacter | sp. HMT 513 | Unnamed | Oral | | | | 1.94 Mbps |
| HMT-485 | Agrobacterium | tumefaciens | Named | Unassigned | | | | 5.21 - 7.27 Mbps |
| HMT-831 | Alloiococcus | otitis | Named | Unassigned | | | | 1.81 Mbps |
| HMT-302 | Alloprevotella | rava | Named | Oral | | | | 2.59 Mbps |
| HMT-473 | Alloprevotella | sp. HMT 473 | Unnamed | Oral | | | | 2.55 Mbps |
| HMT-466 | Alloprevotella | tannerae | Named | Oral | | | | 2.59 Mbps |
| HMT-198 | Alloscardovia | omnicolens | Named | Oral | | | | 1.79 - 1.85 Mbps |
| HMT-859 | Anaerococcus | lactolyticus | Named | Unassigned | | | | 2.21 Mbps |
| HMT-017 | Anaerococcus | octavius | Named | Unassigned | | | | 1.91 - 1.98 Mbps |
| HMT-738 | Anaerococcus | prevotii | Named | Unassigned | | | | 1.70 - 2.00 Mbps |
| HMT-788 | Anaerococcus | tetradius | Named | Unassigned | | | | 2.15 Mbps |
| HMT-121 | Anaeroglobus | geminatus | Named | Oral | | | | 1.80 Mbps |
| HMT-439 | Anaerolineae [G-1] | bacterium HMT 439 | Unnamed | Oral | | | | 1.16 - 2.95 Mbps |
| HMT-182 | Anoxybacillus | flavithermus | Named | Unassigned | | | | 2.81 Mbps |
| HMT-739 | Arachnia | propionica | Named | Oral | | | | 3.40 - 3.45 Mbps |
| HMT-194 | Arachnia | rubra | Named | Oral | | | | 3.32 Mbps |
| HMT-811 | Arcanobacterium | haemolyticum | Named | Unassigned | | | | 1.99 Mbps |
| HMT-190 | Arsenicicoccus | bolidensis | Named | Unassigned | | | | 3.53 Mbps |
| HMT-229 | Arthrospira | platensis | Named | Unassigned | | | | 6.50 Mbps |
| HMT-674 | Atopobium | minutum | Named | Unassigned | | | | 1.71 Mbps |
| HMT-723 | Atopobium | parvulum | Named | Oral | | | | 1.53 - 1.54 Mbps |
| HMT-750 | Atopobium | rimae | Named | Oral | | | | 1.63 - 1.63 Mbps |
| HMT-199 | Atopobium | sp. HMT 199 | Unnamed | Oral | | | | 1.67 Mbps |
| HMT-416 | Atopobium | sp. HMT 416 | Unnamed | Unassigned | | | | 3.00 Mbps |
| HMT-810 | Atopobium | sp. HMT 810 | Unnamed | Unassigned | | | | 1.95 Mbps |
| HMT-814 | Atopobium | vaginae | Named | Unassigned | | | | 1.43 - 1.45 Mbps |
| HMT-824 | Bacillus | anthracis | Named | Unassigned | | | | 5.23 - 5.51 Mbps |
| HMT-045 | Bacillus | clausii | Named | Unassigned | | | | 4.30 Mbps |
| HMT-468 | Bacillus | subtilis | Named | Unassigned | | | | 3.98 - 4.21 Mbps |
| HMT-272 | Bacteroidaceae [G-1] | bacterium HMT 272 | Unnamed | Oral | | | | 2.50 Mbps |
| HMT-274 | Bacteroidales [G-2] | bacterium HMT 274 | Unnamed | Oral | | | | 2.11 Mbps |
| HMT-630 | Bacteroides | heparinolyticus | Named | Unassigned | | | | 3.61 Mbps |
| HMT-787 | Bacteroides | pyogenes | Named | Unassigned | | | | 3.38 - 3.57 Mbps |
| HMT-465 | Bacteroides | zoogleoformans | Named | Unassigned | | | | 3.36 Mbps |
| HMT-001 | Bartonella | schoenbuchensis | Named | Unassigned | | | | 1.68 Mbps |
| HMT-895 | Bifidobacterium | animalis | Named | Unassigned | | | | 1.92 - 1.94 Mbps |
| HMT-889 | Bifidobacterium | breve | Named | Unassigned | | | | 2.31 - 2.50 Mbps |
| HMT-588 | Bifidobacterium | dentium | Named | Unassigned | | | | 2.64 - 2.65 Mbps |
| HMT-862 | Bifidobacterium | longum | Named | Unassigned | | | | 2.26 - 2.83 Mbps |
| HMT-891 | Bifidobacterium | scardovii | Named | Unassigned | | | | 3.14 Mbps |
| HMT-890 | Bifidobacterium | subtile | Named | Unassigned | | | | 2.77 - 2.79 Mbps |
| HMT-828 | Bordetella | pertussis | Named | Unassigned | | | | 4.09 - 4.12 Mbps |
| HMT-636 | Bosea | vestrisii | Named | Unassigned | | | | 5.89 Mbps |
| HMT-597 | Bradyrhizobium | elkanii | Named | Unassigned | | | | 8.67 - 9.48 Mbps |
| HMT-340 | Brevibacterium | paucivorans | Named | Unassigned | | | | 3.00 Mbps |
| HMT-590 | Brevundimonas | diminuta | Named | Unassigned | | | | 3.34 - 3.37 Mbps |
| HMT-241 | Brochothrix | thermosphacta | Named | Unassigned | | | | 2.47 Mbps |
| HMT-603 | Bulleidia | extructa | Named | Oral | | | | 1.42 Mbps |
| HMT-571 | Burkholderia | cepacia | Named | Unassigned | | | | 6.47 - 8.48 Mbps |
| HMT-575 | Campylobacter | concisus | Named | Oral | | | | 1.78 - 2.10 Mbps |
| HMT-580 | Campylobacter | curvus | Named | Oral | | | | 1.95 - 1.97 Mbps |
| HMT-623 | Campylobacter | gracilis | Named | Oral | | | | 2.26 Mbps |
| HMT-748 | Campylobacter | rectus | Named | Oral | | | | 2.51 Mbps |
| HMT-763 | Campylobacter | showae | Named | Oral | | | | 2.07 - 2.19 Mbps |
| HMT-776 | Campylobacter | sputorum | Named | Unassigned | | | | 1.78 Mbps |
| HMT-842 | Campylobacter | ureolyticus | Named | Unassigned | | | | 1.70 - 1.74 Mbps |
| HMT-337 | Capnocytophaga | gingivalis | Named | Oral | | | | 2.67 Mbps |
| HMT-325 | Capnocytophaga | granulosa | Named | Oral | | | | 2.75 Mbps |
| HMT-627 | Capnocytophaga | haemolytica | Named | Oral | | | | 2.69 Mbps |
| HMT-329 | Capnocytophaga | leadbetteri | Named | Oral | | | | 2.54 Mbps |
| HMT-700 | Capnocytophaga | ochracea | Named | Oral | | | | 2.61 - 2.66 Mbps |
| HMT-323 | Capnocytophaga | sp. HMT 323 | Unnamed | Oral | | | | 2.61 Mbps |
| HMT-324 | Capnocytophaga | sp. HMT 324 | Unnamed | Oral | | | | 2.74 Mbps |
| HMT-326 | Capnocytophaga | sp. HMT 326 | Unnamed | Oral | | | | 3.22 Mbps |
| HMT-332 | Capnocytophaga | sp. HMT 332 | Unnamed | Oral | | | | 2.66 Mbps |
| HMT-335 | Capnocytophaga | sp. HMT 335 | Unnamed | Oral | | | | 2.55 Mbps |
| HMT-336 | Capnocytophaga | sp. HMT 336 | Unnamed | Oral | | | | 2.79 Mbps |
| HMT-338 | Capnocytophaga | sp. HMT 338 | Unnamed | Oral | | | | 2.55 Mbps |
| HMT-380 | Capnocytophaga | sp. HMT 380 | Unnamed | Oral | | | | 2.63 Mbps |
| HMT-412 | Capnocytophaga | sp. HMT 412 | Unnamed | Oral | | | | 2.59 Mbps |
| HMT-863 | Capnocytophaga | sp. HMT 863 | Unnamed | Oral | | | | 2.72 Mbps |
| HMT-864 | Capnocytophaga | sp. HMT 864 | Unnamed | Oral | | | | 2.68 Mbps |
| HMT-878 | Capnocytophaga | sp. HMT 878 | Unnamed | Oral | | | | 2.99 Mbps |
| HMT-902 | Capnocytophaga | sp. HMT 902 | Unnamed | Oral | | | | 2.84 Mbps |
| HMT-903 | Capnocytophaga | sp. HMT 903 | Unnamed | Oral | | | | 2.58 Mbps |
| HMT-775 | Capnocytophaga | sputigena | Named | Oral | | | | 3.00 Mbps |
| HMT-633 | Cardiobacterium | hominis | Named | Oral | | | | 2.64 Mbps |
| HMT-540 | Cardiobacterium | valvarum | Named | Oral | | | | 2.55 Mbps |
| HMT-165 | Catonella | morbi | Named | Oral | | | | 3.48 Mbps |
| HMT-374 | Cellulosimicrobium | cellulans | Named | Oral | | | | 4.41 Mbps |
| HMT-726 | Centipeda | periodontii | Named | Oral | | | | 2.76 Mbps |
| HMT-733 | Chlamydophila | pneumoniae | Named | Unassigned | | | | 1.23 - 1.25 Mbps |
| HMT-876 | Clostridiales [F-3][G-1] | bacterium HMT 876 | Unnamed | Unassigned | | | | 4.77 Mbps |
| HMT-858 | Comamonas | testosteroni | Named | Oral | | | | 5.37 - 6.03 Mbps |
| HMT-019 | Corynebacterium | accolens | Named | Nasal | | | | 2.50 - 2.64 Mbps |
| HMT-030 | Corynebacterium | afermentans | Named | Unassigned | | | | 2.35 Mbps |
| HMT-031 | Corynebacterium | amycolatum | Named | Unassigned | | | | 2.41 - 2.56 Mbps |
| HMT-033 | Corynebacterium | appendicis | Named | Unassigned | | | | 2.25 Mbps |
| HMT-034 | Corynebacterium | aurimucosum | Named | Unassigned | | | | 2.57 - 2.82 Mbps |
| HMT-208 | Corynebacterium | bovis | Named | Unassigned | | | | 2.52 Mbps |
| HMT-341 | Corynebacterium | coyleae | Named | Unassigned | | | | 2.39 - 2.52 Mbps |
| HMT-591 | Corynebacterium | diphtheriae | Named | Unassigned | | | | 2.14 - 2.54 Mbps |
| HMT-595 | Corynebacterium | durum | Named | Oral | | | | 2.81 Mbps |
| HMT-047 | Corynebacterium | jeikeium | Named | Unassigned | | | | 2.22 - 2.22 Mbps |
| HMT-049 | Corynebacterium | kroppenstedtii | Named | Unassigned | | | | 2.45 Mbps |
| HMT-050 | Corynebacterium | macginleyi | Named | Unassigned | | | | 2.35 - 2.42 Mbps |
| HMT-333 | Corynebacterium | massiliense | Named | Unassigned | | | | 2.18 Mbps |
| HMT-328 | Corynebacterium | mastitidis | Named | Unassigned | | | | 2.37 Mbps |
| HMT-666 | Corynebacterium | matruchotii | Named | Oral | | | | 2.86 - 2.99 Mbps |
| HMT-053 | Corynebacterium | minutissimum | Named | Unassigned | | | | 2.66 - 2.80 Mbps |
| HMT-835 | Corynebacterium | mucifaciens | Named | Oral | | | | 2.19 Mbps |
| HMT-054 | Corynebacterium | pilbarense | Named | Unassigned | | | | 2.39 - 2.41 Mbps |
| HMT-059 | Corynebacterium | propinquum | Named | Nasal | | | | 2.46 Mbps |
| HMT-060 | Corynebacterium | pseudodiphtheriticum | Named | Nasal | | | | 2.31 - 2.37 Mbps |
| HMT-062 | Corynebacterium | simulans | Named | Unassigned | | | | 2.57 - 2.74 Mbps |
| HMT-063 | Corynebacterium | singulare | Named | Unassigned | | | | 2.77 - 2.83 Mbps |
| HMT-207 | Corynebacterium | sp. HMT 207 | Unnamed | Unassigned | | | | 2.53 - 2.63 Mbps |
| HMT-072 | Corynebacterium | striatum | Named | Unassigned | | | | 2.65 - 2.81 Mbps |
| HMT-077 | Corynebacterium | tuberculostearicum | Named | Unassigned | | | | 2.37 - 2.63 Mbps |
| HMT-184 | Corynebacterium | tuscaniense | Named | Unassigned | | | | 2.23 Mbps |
| HMT-853 | Corynebacterium | urealyticum | Named | Unassigned | | | | 2.19 - 2.37 Mbps |
| HMT-753 | Cronobacter | sakazakii | Named | Unassigned | | | | 4.27 - 4.56 Mbps |
| HMT-579 | Cryptobacterium | curtum | Named | Oral | | | | 1.62 Mbps |
| HMT-027 | Cupriavidus | gilardii | Named | Unassigned | | | | 5.58 Mbps |
| HMT-530 | Cutibacterium | acnes | Named | Oral | | | | 2.43 - 2.56 Mbps |
| HMT-552 | Cutibacterium | avidum | Named | Unassigned | | | | 2.53 - 2.55 Mbps |
| HMT-114 | Cutibacterium | granulosum | Named | Unassigned | | | | 2.13 Mbps |
| HMT-193 | Cutibacterium | sp. HMT 193 | Unnamed | Unassigned | | | | 2.65 Mbps |
| HMT-023 | Delftia | acidovorans | Named | Unassigned | | | | 6.77 - 6.95 Mbps |
| HMT-354 | Dermabacter | hominis | Named | Unassigned | | | | 2.28 - 2.51 Mbps |
| HMT-041 | Desulfobulbus | sp. HMT 041 | Phylotype | Oral | | | | 0.68 - 0.74 Mbps |
| HMT-703 | Desulfomicrobium | orale | Named | Oral | | | | 2.78 Mbps |
| HMT-605 | Desulfovibrio | fairfieldensis | Named | Unassigned | | | | 3.70 Mbps |
| HMT-118 | Dialister | invisus | Named | Oral | | | | 1.90 Mbps |
| HMT-843 | Dialister | micraerophilus | Named | Oral | | | | 1.28 Mbps |
| HMT-736 | Dialister | pneumosintes | Named | Oral | | | | 1.27 Mbps |
| HMT-368 | Dietzia | cinnamea | Named | Unassigned | | | | 3.56 - 3.68 Mbps |
| HMT-813 | Dolosigranulum | pigrum | Named | Nasal | | | | 1.86 Mbps |
| HMT-654 | Eggerthella | lenta | Named | Unassigned | | | | 3.63 Mbps |
| HMT-569 | Eggerthia | catenaformis | Named | Oral | | | | 1.95 Mbps |
| HMT-577 | Eikenella | corrodens | Named | Oral | | | | 2.17 - 2.21 Mbps |
| HMT-196 | Enhydrobacter | aerosaccus | Named | Unassigned | | | | 2.86 Mbps |
| HMT-565 | Enterobacter | cancerogenus | Named | Unassigned | | | | 4.64 - 4.81 Mbps |
| HMT-634 | Enterobacter | hormaechei | Named | Unassigned | | | | 4.86 Mbps |
| HMT-801 | Enterococcus | casseliflavus | Named | Unassigned | | | | 3.45 - 3.65 Mbps |
| HMT-880 | Enterococcus | durans | Named | Unassigned | | | | 2.73 - 3.15 Mbps |
| HMT-604 | Enterococcus | faecalis | Named | Unassigned | | | | 2.74 - 3.36 Mbps |
| HMT-803 | Enterococcus | italicus | Named | Unassigned | | | | 2.42 Mbps |
| HMT-802 | Enterococcus | saccharolyticus | Named | Unassigned | | | | 2.64 - 3.14 Mbps |
| HMT-484 | Erysipelothrix | tonsillarum | Named | Unassigned | | | | 1.93 Mbps |
| HMT-747 | Erythromicrobium | ramosum | Named | Unassigned | | | | 3.24 Mbps |
| HMT-574 | Escherichia | coli | Named | Unassigned | | | | 4.56 - 5.93 Mbps |
| HMT-655 | Eubacterium | limosum | Named | Unassigned | | | | 4.32 Mbps |
| HMT-935 | Fastidiosipila | sanguinis | Named | Unassigned | | | | 1.79 Mbps |
| HMT-539 | Filifactor | alocis | Named | Oral | | | | 1.93 Mbps |
| HMT-662 | Finegoldia | magna | Named | Unassigned | | | | 1.83 - 2.03 Mbps |
| HMT-363 | Fretibacterium | fastidiosum | Named | Oral | | | | 2.73 Mbps |
| HMT-860 | Fusobacterium | gonidiaformans | Named | Unassigned | | | | 1.70 - 1.93 Mbps |
| HMT-953 | Fusobacterium | hwasookii | Named | Oral | | | | 2.36 - 2.53 Mbps |
| HMT-689 | Fusobacterium | naviforme | Named | Oral | | | | 2.40 - 2.43 Mbps |
| HMT-690 | Fusobacterium | necrophorum | Named | Oral | | | | 1.96 - 2.31 Mbps |
| HMT-420 | Fusobacterium | nucleatum subsp. animalis | Named | Oral | | | | 2.13 - 2.72 Mbps |
| HMT-698 | Fusobacterium | nucleatum subsp. nucleatum | Named | Oral | | | | 2.17 - 2.29 Mbps |
| HMT-202 | Fusobacterium | nucleatum subsp. polymorphum | Named | Oral | | | | 2.40 - 2.62 Mbps |
| HMT-200 | Fusobacterium | nucleatum subsp. vincentii | Named | Oral | | | | 2.04 - 2.27 Mbps |
| HMT-201 | Fusobacterium | periodonticum | Named | Oral | | | | 2.48 - 2.62 Mbps |
| HMT-203 | Fusobacterium | sp. HMT 203 | Unnamed | Oral | | | | 2.13 - 2.44 Mbps |
| HMT-248 | Fusobacterium | sp. HMT 248 | Unnamed | Unassigned | | | | 1.81 Mbps |
| HMT-370 | Fusobacterium | sp. HMT 370 | Unnamed | Oral | | | | 2.09 Mbps |
| HMT-829 | Gardnerella | vaginalis | Named | Vaginal | | | | 1.55 - 1.73 Mbps |
| HMT-555 | Gemella | bergeri | Named | Oral | | | | 1.60 Mbps |
| HMT-626 | Gemella | haemolysans | Named | Oral | | | | 1.92 - 2.05 Mbps |
| HMT-046 | Gemella | morbillorum | Named | Oral | | | | 1.75 Mbps |
| HMT-757 | Gemella | sanguinis | Named | Oral | | | | 1.76 Mbps |
| HMT-928 | Gemella | sp. HMT 928 | Unnamed | Oral | | | | 1.77 Mbps |
| HMT-534 | Granulicatella | adiacens | Named | Oral | | | | 1.95 Mbps |
| HMT-596 | Granulicatella | elegans | Named | Oral | | | | 1.74 Mbps |
| HMT-316 | Haematobacter | missouriensis | Named | Unassigned | | | | 4.32 Mbps |
| HMT-535 | Haemophilus | aegyptius | Named | Oral | | | | 1.96 Mbps |
| HMT-821 | Haemophilus | ducreyi | Named | Unassigned | | | | 1.70 Mbps |
| HMT-851 | Haemophilus | haemolyticus | Named | Oral | | | | 1.82 - 2.33 Mbps |
| HMT-641 | Haemophilus | influenzae | Named | Nasal | | | | 0.86 - 2.01 Mbps |
| HMT-945 | Haemophilus | parahaemolyticus | Named | Oral | | | | 2.03 Mbps |
| HMT-718 | Haemophilus | parainfluenzae | Named | Nasal, Oral | | | | 1.90 - 2.15 Mbps |
| HMT-035 | Haemophilus | paraphrohaemolyticus | Named | Oral | | | | 2.02 Mbps |
| HMT-946 | Haemophilus | pittmaniae | Named | Oral | | | | 2.18 Mbps |
| HMT-036 | Haemophilus | sp. HMT 036 | Unnamed | Oral | | | | 1.81 - 1.93 Mbps |
| HMT-944 | Haemophilus | sputorum | Named | Oral | | | | 2.08 Mbps |
| HMT-812 | Helicobacter | pylori | Named | Unassigned | | | | 1.57 - 1.68 Mbps |
| HMT-339 | Janibacter | indicus | Named | Unassigned | | | | 3.40 Mbps |
| HMT-635 | Johnsonella | ignava | Named | Oral | | | | 2.69 Mbps |
| HMT-777 | Jonquetella | anthropi | Named | Oral | | | | 1.68 - 1.79 Mbps |
| HMT-582 | Kingella | denitrificans | Named | Oral | | | | 2.22 Mbps |
| HMT-646 | Kingella | kingae | Named | Unassigned | | | | 1.98 - 2.10 Mbps |
| HMT-706 | Kingella | oralis | Named | Oral | | | | 2.41 Mbps |
| HMT-153 | Klebsiella | aerogenes | Named | Unassigned | | | | 5.28 Mbps |
| HMT-731 | Klebsiella | pneumoniae | Named | Unassigned | | | | 5.45 - 5.92 Mbps |
| HMT-865 | Kluyvera | ascorbata | Named | Unassigned | | | | 4.93 Mbps |
| HMT-084 | Kocuria | palustris | Named | Unassigned | | | | 2.85 Mbps |
| HMT-197 | Kocuria | rhizophila | Named | Unassigned | | | | 2.70 Mbps |
| HMT-855 | Kytococcus | sedentarius | Named | Unassigned | | | | 2.79 Mbps |
| HMT-082 | Lachnoanaerobaculum | orale | Named | Oral | | | | 2.95 Mbps |
| HMT-494 | Lachnoanaerobaculum | saburreum | Named | Oral | | | | 3.07 - 3.08 Mbps |
| HMT-083 | Lachnoanaerobaculum | sp. HMT 083 | Unnamed | Oral | | | | 2.87 Mbps |
| HMT-107 | Lachnoanaerobaculum | umeaense | Named | Oral | | | | 3.29 Mbps |
| HMT-096 | Lachnospiraceae [G-2] | bacterium HMT 096 | Unnamed | Oral | | | | 2.23 - 2.24 Mbps |
| HMT-500 | Lachnospiraceae [G-8] | bacterium HMT 500 | Unnamed | Oral | | | | 3.20 Mbps |
| HMT-529 | Lactobacillus | acidophilus | Named | Unassigned | | | | 1.95 - 2.10 Mbps |
| HMT-558 | Lactobacillus | brevis | Named | Unassigned | | | | 2.34 - 3.14 Mbps |
| HMT-881 | Lactobacillus | buchneri | Named | Unassigned | | | | 2.56 - 2.91 Mbps |
| HMT-568 | Lactobacillus | casei | Named | Unassigned | | | | 2.90 - 3.15 Mbps |
| HMT-816 | Lactobacillus | coleohominis | Named | Unassigned | | | | 1.73 Mbps |
| HMT-817 | Lactobacillus | crispatus | Named | Oral | | | | 2.04 - 2.70 Mbps |
| HMT-608 | Lactobacillus | fermentum | Named | Oral | | | | 1.87 - 2.57 Mbps |
| HMT-615 | Lactobacillus | gasseri | Named | Oral | | | | 1.82 - 2.01 Mbps |
| HMT-838 | Lactobacillus | iners | Named | Vaginal | | | | 1.24 - 1.37 Mbps |
| HMT-839 | Lactobacillus | jensenii | Named | Vaginal | | | | 1.60 - 1.75 Mbps |
| HMT-819 | Lactobacillus | johnsonii | Named | Unassigned | | | | 1.78 - 1.99 Mbps |
| HMT-424 | Lactobacillus | kisonensis | Named | Unassigned | | | | 2.99 Mbps |
| HMT-709 | Lactobacillus | oris | Named | Unassigned | | | | 2.12 - 2.17 Mbps |
| HMT-882 | Lactobacillus | panis | Named | Oral | | | | 2.01 Mbps |
| HMT-716 | Lactobacillus | paracasei | Named | Oral | | | | 2.80 - 3.09 Mbps |
| HMT-418 | Lactobacillus | parafarraginis | Named | Unassigned | | | | 2.85 Mbps |
| HMT-883 | Lactobacillus | pentosus | Named | Unassigned | | | | 3.43 Mbps |
| HMT-861 | Lactobacillus | plantarum | Named | Unassigned | | | | 3.11 - 3.36 Mbps |
| HMT-884 | Lactobacillus | rapi | Named | Unassigned | | | | 2.85 Mbps |
| HMT-818 | Lactobacillus | reuteri clade 818 | Named | Unassigned | | | | 2.00 - 2.32 Mbps |
| HMT-749 | Lactobacillus | rhamnosus | Named | Oral | | | | 2.52 - 3.16 Mbps |
| HMT-756 | Lactobacillus | salivarius | Named | Oral | | | | 1.97 - 2.16 Mbps |
| HMT-461 | Lactobacillus | ultunensis | Named | Unassigned | | | | 2.25 Mbps |
| HMT-051 | Lactobacillus | vaginalis | Named | Oral | | | | 1.88 Mbps |
| HMT-804 | Lactococcus | lactis | Named | Oral | | | | 2.37 - 2.64 Mbps |
| HMT-022 | Lautropia | mirabilis | Named | Oral | | | | 3.15 Mbps |
| HMT-173 | Lawsonella | clevelandensis | Named | Skin | | | | 1.92 Mbps |
| HMT-563 | Leptotrichia | buccalis | Named | Oral | | | | 2.47 Mbps |
| HMT-845 | Leptotrichia | goodfellowii | Named | Oral | | | | 2.28 - 2.29 Mbps |
| HMT-224 | Leptotrichia | hofstadii | Named | Oral | | | | 2.46 - 2.56 Mbps |
| HMT-213 | Leptotrichia | hongkongensis | Named | Oral | | | | 2.28 Mbps |
| HMT-214 | Leptotrichia | shahii | Named | Oral | | | | 2.14 Mbps |
| HMT-212 | Leptotrichia | sp. HMT 212 | Unnamed | Oral | | | | 2.44 Mbps |
| HMT-215 | Leptotrichia | sp. HMT 215 | Unnamed | Oral | | | | 2.31 Mbps |
| HMT-218 | Leptotrichia | sp. HMT 218 | Unnamed | Oral | | | | 2.17 Mbps |
| HMT-221 | Leptotrichia | sp. HMT 221 | Unnamed | Oral | | | | 2.08 Mbps |
| HMT-223 | Leptotrichia | sp. HMT 223 | Unnamed | Oral | | | | 2.58 Mbps |
| HMT-225 | Leptotrichia | sp. HMT 225 | Unnamed | Oral | | | | 2.40 Mbps |
| HMT-417 | Leptotrichia | sp. HMT 417 | Unnamed | Oral | | | | 2.53 Mbps |
| HMT-498 | Leptotrichia | sp. HMT 498 | Unnamed | Oral | | | | 2.15 Mbps |
| HMT-847 | Leptotrichia | sp. HMT 847 | Unnamed | Unassigned | | | | 2.19 Mbps |
| HMT-879 | Leptotrichia | sp. HMT 879 | Unnamed | Oral | | | | 2.42 Mbps |
| HMT-222 | Leptotrichia | wadei | Named | Oral | | | | 2.32 - 2.35 Mbps |
| HMT-825 | Listeria | monocytogenes | Named | Unassigned | | | | 2.85 - 3.22 Mbps |
| HMT-614 | Lysinibacillus | fusiformis | Named | Unassigned | | | | 4.55 - 4.65 Mbps |
| HMT-122 | Megasphaera | micronuciformis | Named | Oral | | | | 1.77 Mbps |
| HMT-659 | Mesorhizobium | loti | Named | Unassigned | | | | 7.02 - 7.60 Mbps |
| HMT-815 | Methanobrevibacter | oralis | Named | Oral | | | | 2.11 - 2.14 Mbps |
| HMT-330 | Micavibrio | aeruginosavorus | Named | Unassigned | | | | 2.48 Mbps |
| HMT-186 | Microbacterium | flavescens | Named | Unassigned | | | | 3.17 Mbps |
| HMT-185 | Microbacterium | ginsengisoli | Named | Unassigned | | | | 3.05 Mbps |
| HMT-087 | Micrococcus | luteus | Named | Unassigned | | | | 2.50 Mbps |
| HMT-684 | Mitsuokella | multacida | Named | Unassigned | | | | 2.58 Mbps |
| HMT-131 | Mitsuokella | sp. HMT 131 | Unnamed | Oral | | | | 2.31 Mbps |
| HMT-830 | Mobiluncus | mulieris | Named | Unassigned | | | | 2.38 - 2.53 Mbps |
| HMT-593 | Mogibacterium | diversum | Named | Oral | | | | 1.82 Mbps |
| HMT-742 | Mogibacterium | pumilum | Named | Unassigned | | | | 1.86 Mbps |
| HMT-042 | Mogibacterium | timidum | Named | Oral | | | | 1.81 - 1.86 Mbps |
| HMT-833 | Moraxella | catarrhalis | Named | Nasal | | | | 1.78 - 1.96 Mbps |
| HMT-154 | Moraxella | lincolnii | Named | Nasal | | | | 2.08 Mbps |
| HMT-098 | Moraxella | nonliquefaciens | Named | Nasal | | | | 2.19 Mbps |
| HMT-711 | Moraxella | osloensis | Named | Unassigned | | | | 2.65 Mbps |
| HMT-823 | Mycobacterium | leprae | Named | Unassigned | | | | 3.27 - 3.27 Mbps |
| HMT-692 | Mycobacterium | neoaurum | Named | Unassigned | | | | 5.42 Mbps |
| HMT-822 | Mycobacterium | tuberculosis | Named | Unassigned | | | | 4.40 - 4.42 Mbps |
| HMT-607 | Mycoplasma | fermentans | Named | Unassigned | | | | 0.98 - 1.12 Mbps |
| HMT-616 | Mycoplasma | genitalium | Named | Unassigned | | | | 0.58 - 0.58 Mbps |
| HMT-632 | Mycoplasma | hominis | Named | Unassigned | | | | 0.67 - 0.68 Mbps |
| HMT-704 | Mycoplasma | orale | Named | Oral | | | | 0.71 Mbps |
| HMT-732 | Mycoplasma | pneumoniae | Named | Unassigned | | | | 0.81 - 0.82 Mbps |
| HMT-754 | Mycoplasma | salivarium | Named | Oral | | | | 0.71 Mbps |
| HMT-013 | Neisseria | bacilliformis | Named | Oral | | | | 2.47 Mbps |
| HMT-956 | Neisseria | cinerea | Named | Oral | | | | 1.87 Mbps |
| HMT-598 | Neisseria | elongata | Named | Oral | | | | 2.28 Mbps |
| HMT-610 | Neisseria | flavescens | Named | Oral | | | | 2.20 - 2.21 Mbps |
| HMT-621 | Neisseria | gonorrhoeae | Named | Unassigned | | | | 2.15 - 2.24 Mbps |
| HMT-649 | Neisseria | lactamica | Named | Oral | | | | 2.02 - 2.22 Mbps |
| HMT-099 | Neisseria | macacae | Named | Unassigned | | | | 2.75 Mbps |
| HMT-669 | Neisseria | meningitidis | Named | Oral | | | | 2.15 - 2.28 Mbps |
| HMT-682 | Neisseria | mucosa | Named | Oral | | | | 2.17 - 2.58 Mbps |
| HMT-014 | Neisseria | oralis | Named | Oral | | | | 2.52 Mbps |
| HMT-101 | Neisseria | perflava | Named | Unassigned | | | | 2.32 - 3.78 Mbps |
| HMT-737 | Neisseria | polysaccharea | Named | Unassigned | | | | 2.03 Mbps |
| HMT-764 | Neisseria | sicca | Named | Oral | | | | 2.64 - 2.83 Mbps |
| HMT-020 | Neisseria | sp. HMT 020 | Unnamed | Oral | | | | 2.36 Mbps |
| HMT-476 | Neisseria | subflava | Named | Oral | | | | 2.29 Mbps |
| HMT-092 | Neisseria | weaveri | Named | Oral | | | | 2.13 - 2.18 Mbps |
| HMT-342 | Novosphingobium | panipatense | Named | Unassigned | | | | 5.74 Mbps |
| HMT-544 | Ochrobactrum | anthropi | Named | Unassigned | | | | 5.21 - 5.28 Mbps |
| HMT-806 | Olsenella | profusa | Named | Oral | | | | 2.72 Mbps |
| HMT-807 | Olsenella | sp. HMT 807 | Unnamed | Oral | | | | 3.21 Mbps |
| HMT-809 | Olsenella | sp. HMT 809 | Unnamed | Unassigned | | | | 2.16 Mbps |
| HMT-038 | Olsenella | uli | Named | Oral | | | | 2.05 - 2.15 Mbps |
| HMT-108 | Oribacterium | asaccharolyticum | Named | Oral | | | | 2.52 Mbps |
| HMT-934 | Oribacterium | parvum | Named | Oral | | | | 2.47 Mbps |
| HMT-457 | Oribacterium | sinus | Named | Oral | | | | 2.71 Mbps |
| HMT-078 | Oribacterium | sp. HMT 078 | Unnamed | Oral | | | | 2.68 - 2.69 Mbps |
| HMT-102 | Oribacterium | sp. HMT 102 | Unnamed | Oral | | | | 2.53 Mbps |
| HMT-894 | Ottowia | sp. HMT 894 | Unnamed | Unassigned | | | | 2.93 Mbps |
| HMT-921 | Paenibacillus | glucanolyticus | Named | Unassigned | | | | 5.90 - 6.57 Mbps |
| HMT-786 | Paenibacillus | phoenicis | Named | Unassigned | | | | 5.10 Mbps |
| HMT-104 | Paracoccus | yeei | Named | Unassigned | | | | 4.83 Mbps |
| HMT-586 | Parascardovia | denticolens | Named | Unassigned | | | | 1.89 - 2.00 Mbps |
| HMT-111 | Parvimonas | micra | Named | Oral | | | | 1.70 Mbps |
| HMT-110 | Parvimonas | sp. HMT 110 | Unnamed | Oral | | | | 1.56 Mbps |
| HMT-393 | Parvimonas | sp. HMT 393 | Unnamed | Oral | | | | 1.48 Mbps |
| HMT-848 | Peptidiphaga | gingivicola | Named | Oral | | | | 2.52 Mbps |
| HMT-183 | Peptidiphaga | sp. HMT 183 | Unnamed | Oral | | | | 2.37 Mbps |
| HMT-113 | Peptoniphilaceae [G-1] | bacterium HMT 113 | Unnamed | Oral | | | | 2.09 Mbps |
| HMT-929 | Peptoniphilaceae [G-3] | bacterium HMT 929 | Unnamed | Unassigned | | | | 1.65 Mbps |
| HMT-548 | Peptoniphilus | asaccharolyticus | Named | Unassigned | | | | 2.23 Mbps |
| HMT-109 | Peptoniphilus | harei | Named | Unassigned | | | | 1.78 - 1.90 Mbps |
| HMT-840 | Peptoniphilus | indolicus | Named | Unassigned | | | | 2.24 Mbps |
| HMT-836 | Peptoniphilus | lacrimalis | Named | Oral | | | | 1.63 - 1.85 Mbps |
| HMT-187 | Peptoniphilus | sp. HMT 187 | Unnamed | Unassigned | | | | 1.88 Mbps |
| HMT-375 | Peptoniphilus | sp. HMT 375 | Unnamed | Unassigned | | | | 1.95 Mbps |
| HMT-386 | Peptoniphilus | sp. HMT 386 | Unnamed | Unassigned | | | | 1.57 Mbps |
| HMT-105 | Peptostreptococcaceae [XI][G-1] | [Eubacterium] infirmum | Named | Oral | | | | 1.91 Mbps |
| HMT-467 | Peptostreptococcaceae [XI][G-1] | [Eubacterium] sulci | Named | Oral | | | | 1.74 Mbps |
| HMT-759 | Peptostreptococcaceae [XI][G-5] | [Eubacterium] saphenum | Named | Oral | | | | 1.08 Mbps |
| HMT-673 | Peptostreptococcaceae [XI][G-6] | [Eubacterium] minutum | Named | Oral | | | | 1.91 Mbps |
| HMT-694 | Peptostreptococcaceae [XI][G-6] | [Eubacterium] nodatum | Named | Oral | | | | 1.83 Mbps |
| HMT-081 | Peptostreptococcaceae [XI][G-7] | bacterium HMT 081 | Unnamed | Oral | | | | 2.58 Mbps |
| HMT-377 | Peptostreptococcaceae [XI][G-7] | [Eubacterium] yurii subsps. yurii & margaretiae | Named | Oral | | | | 2.51 Mbps |
| HMT-557 | Peptostreptococcaceae [XI][G-9] | [Eubacterium] brachy | Named | Oral | | | | 1.54 Mbps |
| HMT-542 | Peptostreptococcus | anaerobius | Named | Oral | | | | 1.99 - 2.11 Mbps |
| HMT-112 | Peptostreptococcus | stomatis | Named | Oral | | | | 1.99 Mbps |
| HMT-007 | Porphyrobacter | tepidarius | Named | Unassigned | | | | 3.22 Mbps |
| HMT-547 | Porphyromonas | asaccharolytica | Named | Unassigned | | | | 2.19 - 2.20 Mbps |
| HMT-283 | Porphyromonas | catoniae | Named | Oral | | | | 2.04 - 2.10 Mbps |
| HMT-273 | Porphyromonas | endodontalis | Named | Oral | | | | 2.06 Mbps |
| HMT-619 | Porphyromonas | gingivalis | Named | Oral | | | | 1.78 - 2.48 Mbps |
| HMT-279 | Porphyromonas | pasteri | Named | Oral | | | | 2.27 Mbps |
| HMT-275 | Porphyromonas | sp. HMT 275 | Unnamed | Oral | | | | 2.18 Mbps |
| HMT-278 | Porphyromonas | sp. HMT 278 | Unnamed | Oral | | | | 2.16 Mbps |
| HMT-785 | Porphyromonas | uenonis | Named | Unassigned | | | | 2.24 - 2.26 Mbps |
| HMT-943 | Prevotella | aurantiaca | Named | Oral | | | | 3.00 Mbps |
| HMT-553 | Prevotella | baroniae | Named | Oral | | | | 3.02 - 3.13 Mbps |
| HMT-556 | Prevotella | bivia | Named | Oral | | | | 2.41 - 2.58 Mbps |
| HMT-560 | Prevotella | buccae | Named | Oral | | | | 3.28 - 3.36 Mbps |
| HMT-562 | Prevotella | buccalis | Named | Unassigned | | | | 2.76 - 3.03 Mbps |
| HMT-583 | Prevotella | dentalis | Named | Oral | | | | 3.29 Mbps |
| HMT-291 | Prevotella | denticola | Named | Oral | | | | 2.94 - 3.18 Mbps |
| HMT-600 | Prevotella | enoeca | Named | Oral | | | | 2.78 - 2.86 Mbps |
| HMT-782 | Prevotella | fusca | Named | Oral | | | | 3.17 - 3.26 Mbps |
| HMT-298 | Prevotella | histicola | Named | Oral | | | | 2.95 - 3.00 Mbps |
| HMT-643 | Prevotella | intermedia | Named | Oral | | | | 2.56 - 3.15 Mbps |
| HMT-658 | Prevotella | loescheii | Named | Oral | | | | 3.51 Mbps |
| HMT-289 | Prevotella | maculosa | Named | Oral | | | | 3.15 - 3.31 Mbps |
| HMT-665 | Prevotella | marshii | Named | Oral | | | | 2.52 - 2.56 Mbps |
| HMT-469 | Prevotella | melaninogenica | Named | Oral | | | | 2.98 - 3.62 Mbps |
| HMT-378 | Prevotella | micans | Named | Oral | | | | 2.43 - 2.49 Mbps |
| HMT-685 | Prevotella | multiformis | Named | Oral | | | | 3.03 - 3.06 Mbps |
| HMT-794 | Prevotella | multisaccharivorax | Named | Unassigned | | | | 3.39 Mbps |
| HMT-299 | Prevotella | nanceiensis | Named | Oral | | | | 2.48 Mbps |
| HMT-693 | Prevotella | nigrescens | Named | Oral | | | | 2.67 - 3.07 Mbps |
| HMT-705 | Prevotella | oralis | Named | Oral | | | | 2.84 - 2.99 Mbps |
| HMT-311 | Prevotella | oris | Named | Oral | | | | 3.06 - 3.25 Mbps |
| HMT-288 | Prevotella | oulorum | Named | Oral | | | | 2.81 - 2.83 Mbps |
| HMT-714 | Prevotella | pallens | Named | Oral | | | | 3.13 Mbps |
| HMT-303 | Prevotella | pleuritidis | Named | Oral | | | | 2.71 Mbps |
| HMT-781 | Prevotella | saccharolytica | Named | Oral | | | | 2.85 - 2.98 Mbps |
| HMT-307 | Prevotella | salivae | Named | Oral | | | | 3.10 - 3.27 Mbps |
| HMT-885 | Prevotella | scopos | Named | Oral | | | | 3.18 - 3.30 Mbps |
| HMT-795 | Prevotella | shahii | Named | Oral | | | | 3.49 Mbps |
| HMT-306 | Prevotella | sp. HMT 306 | Unnamed | Oral | | | | 2.95 Mbps |
| HMT-313 | Prevotella | sp. HMT 313 | Unnamed | Oral | | | | 3.92 - 4.12 Mbps |
| HMT-314 | Prevotella | sp. HMT 314 | Unnamed | Oral | | | | 3.19 Mbps |
| HMT-317 | Prevotella | sp. HMT 317 | Unnamed | Oral | | | | 4.10 Mbps |
| HMT-376 | Prevotella | sp. HMT 376 | Unnamed | Oral | | | | 3.02 Mbps |
| HMT-472 | Prevotella | sp. HMT 472 | Unnamed | Oral | | | | 3.64 Mbps |
| HMT-475 | Prevotella | sp. HMT 475 | Unnamed | Oral | | | | 2.56 Mbps |
| HMT-820 | Prevotella | sp. HMT 820 | Unnamed | Oral | | | | 3.20 Mbps |
| HMT-572 | Prevotella | veroralis | Named | Oral | | | | 2.83 - 2.99 Mbps |
| HMT-192 | Propionibacteriaceae [G-2] | bacterium HMT 192 | Unnamed | Unassigned | | | | 2.71 Mbps |
| HMT-676 | Proteus | mirabilis | Named | Unassigned | | | | 3.85 - 4.10 Mbps |
| HMT-536 | Pseudomonas | aeruginosa | Named | Unassigned | | | | 6.26 - 6.87 Mbps |
| HMT-612 | Pseudomonas | fluorescens | Named | Unassigned | | | | 6.02 - 7.07 Mbps |
| HMT-344 | Pseudomonas | luteola | Named | Unassigned | | | | 5.42 Mbps |
| HMT-834 | Pseudomonas | otitidis | Named | Unassigned | | | | 6.30 Mbps |
| HMT-740 | Pseudomonas | pseudoalcaligenes | Named | Unassigned | | | | 4.69 - 6.68 Mbps |
| HMT-477 | Pseudomonas | stutzeri | Named | Unassigned | | | | 4.17 - 4.71 Mbps |
| HMT-538 | Pseudoramibacter | alactolyticus | Named | Oral | | | | 2.36 Mbps |
| HMT-357 | Pyramidobacter | piscolens | Named | Oral | | | | 2.56 Mbps |
| HMT-854 | Ralstonia | pickettii | Named | Unassigned | | | | 5.33 - 8.13 Mbps |
| HMT-857 | Rhodobacter | capsulatus | Named | Unassigned | | | | 3.65 - 3.87 Mbps |
| HMT-244 | Roseomonas | gilardii | Named | Unassigned | | | | 5.41 Mbps |
| HMT-245 | Roseomonas | mucosa | Named | Unassigned | | | | 4.74 Mbps |
| HMT-188 | Rothia | aeria | Named | Oral | | | | 2.58 - 2.60 Mbps |
| HMT-587 | Rothia | dentocariosa | Named | Oral | | | | 2.51 - 2.53 Mbps |
| HMT-681 | Rothia | mucilaginosa | Named | Oral | | | | 2.26 - 2.31 Mbps |
| HMT-348 | Saccharibacteria (TM7) [G-1] | bacterium HMT 348 | Phylotype | Oral | | | | 0.11 - 0.47 Mbps |
| HMT-349 | Saccharibacteria (TM7) [G-1] | bacterium HMT 349 | Phylotype | Oral | | | | 1.02 Mbps |
| HMT-488 | Saccharibacteria (TM7) [G-1] | bacterium HMT 488 | Unnamed | Oral | | | | 0.83 - 0.93 Mbps |
| HMT-952 | Saccharibacteria (TM7) [G-1] | bacterium HMT 952 | Unnamed | Oral | | | | 0.71 - 0.71 Mbps |
| HMT-957 | Saccharibacteria (TM7) [G-1] | bacterium HMT 957 | Unnamed | Oral | | | | 0.78 Mbps |
| HMT-955 | Saccharibacteria (TM7) [G-8] | bacterium HMT 955 | Unnamed | Oral | | | | 0.84 - 0.89 Mbps |
| HMT-856 | Sanguibacter | keddieii | Named | Unassigned | | | | 4.25 Mbps |
| HMT-642 | Scardovia | inopinata | Named | Unassigned | | | | 1.80 Mbps |
| HMT-195 | Scardovia | wiggsiae | Named | Oral | | | | 1.56 Mbps |
| HMT-850 | Schaalia | cardiffensis | Named | Oral | | | | 2.21 Mbps |
| HMT-617 | Schaalia | georgiae | Named | Oral | | | | 2.48 - 2.50 Mbps |
| HMT-181 | Schaalia | lingnae [Not Validly Published] | Named | Oral | | | | 1.90 Mbps |
| HMT-671 | Schaalia | meyeri | Named | Oral | | | | 2.05 Mbps |
| HMT-701 | Schaalia | odontolytica | Named | Oral | | | | 2.34 - 2.43 Mbps |
| HMT-172 | Schaalia | sp. HMT 172 | Unnamed | Oral | | | | 2.47 Mbps |
| HMT-178 | Schaalia | sp. HMT 178 | Unnamed | Oral | | | | 2.82 Mbps |
| HMT-180 | Schaalia | sp. HMT 180 | Unnamed | Oral | | | | 2.37 Mbps |
| HMT-877 | Schaalia | sp. HMT 877 | Unnamed | Oral | | | | 2.71 Mbps |
| HMT-024 | Schlegelella | thermodepolymerans | Named | Unassigned | | | | 3.83 - 4.03 Mbps |
| HMT-261 | Segetibacter | aerophilus | Named | Unassigned | | | | 5.89 Mbps |
| HMT-124 | Selenomonas | artemidis | Named | Oral | | | | 2.21 - 2.35 Mbps |
| HMT-125 | Selenomonas | flueggei | Named | Oral | | | | 2.17 Mbps |
| HMT-639 | Selenomonas | infelix | Named | Oral | | | | 2.41 Mbps |
| HMT-130 | Selenomonas | noxia | Named | Oral | | | | 2.05 - 2.11 Mbps |
| HMT-126 | Selenomonas | sp. HMT 126 | Unnamed | Oral | | | | 2.89 Mbps |
| HMT-133 | Selenomonas | sp. HMT 133 | Unnamed | Oral | | | | 2.07 Mbps |
| HMT-136 | Selenomonas | sp. HMT 136 | Unnamed | Oral | | | | 2.46 Mbps |
| HMT-137 | Selenomonas | sp. HMT 137 | Unnamed | Oral | | | | 2.48 Mbps |
| HMT-138 | Selenomonas | sp. HMT 138 | Unnamed | Oral | | | | 2.38 Mbps |
| HMT-149 | Selenomonas | sp. HMT 149 | Unnamed | Oral | | | | 2.47 Mbps |
| HMT-478 | Selenomonas | sp. HMT 478 | Unnamed | Oral | | | | 2.28 Mbps |
| HMT-892 | Selenomonas | sp. HMT 892 | Unnamed | Oral | | | | 2.31 Mbps |
| HMT-920 | Selenomonas | sp. HMT 920 | Unnamed | Oral | | | | 2.44 Mbps |
| HMT-151 | Selenomonas | sputigena | Named | Oral | | | | 2.56 Mbps |
| HMT-115 | Serratia | marcescens | Named | Unassigned | | | | 5.13 Mbps |
| HMT-095 | Shuttleworthia | satelles | Named | Oral | | | | 2.17 Mbps |
| HMT-683 | Simonsiella | muelleri | Named | Oral | | | | 2.37 Mbps |
| HMT-602 | Slackia | exigua | Named | Oral | | | | 2.10 Mbps |
| HMT-844 | Sneathia | amnii [Not Validly Published] | Named | Oral | | | | 1.33 Mbps |
| HMT-837 | Sneathia | sanguinegens | Named | Oral | | | | 1.29 Mbps |
| HMT-678 | Solobacterium | moorei | Named | Oral | | | | 2.01 - 2.34 Mbps |
| HMT-003 | Sphingomonas | echinoides | Named | Unassigned | | | | 4.26 Mbps |
| HMT-550 | Staphylococcus | aureus | Named | Nasal | | | | 2.72 - 2.97 Mbps |
| HMT-331 | Staphylococcus | auricularis | Named | Unassigned | | | | 2.20 Mbps |
| HMT-116 | Staphylococcus | capitis | Named | Unassigned | | | | 2.50 Mbps |
| HMT-567 | Staphylococcus | caprae | Named | Oral | | | | 2.47 Mbps |
| HMT-117 | Staphylococcus | cohnii | Named | Unassigned | | | | 2.63 Mbps |
| HMT-601 | Staphylococcus | epidermidis | Named | Oral | | | | 2.45 - 2.65 Mbps |
| HMT-120 | Staphylococcus | haemolyticus | Named | Unassigned | | | | 2.56 Mbps |
| HMT-127 | Staphylococcus | hominis | Named | Unassigned | | | | 1.98 Mbps |
| HMT-128 | Staphylococcus | lugdunensis | Named | Unassigned | | | | 2.61 Mbps |
| HMT-141 | Staphylococcus | pasteuri | Named | Unassigned | | | | 2.56 Mbps |
| HMT-142 | Staphylococcus | pettenkoferi | Named | Unassigned | | | | 2.50 Mbps |
| HMT-233 | Staphylococcus | schleiferi | Named | Unassigned | | | | 2.53 Mbps |
| HMT-076 | Staphylococcus | warneri | Named | Oral | | | | 2.43 - 2.56 Mbps |
| HMT-663 | Stenotrophomonas | maltophilia | Named | Unassigned | | | | 4.54 - 4.92 Mbps |
| HMT-037 | Stenotrophomonas | nitritireducens | Named | Unassigned | | | | 3.98 Mbps |
| HMT-419 | Stomatobaculum | longum | Named | Oral | | | | 2.31 Mbps |
| HMT-537 | Streptococcus | agalactiae | Named | Unassigned | | | | 2.02 - 2.46 Mbps |
| HMT-543 | Streptococcus | anginosus | Named | Oral | | | | 1.82 - 2.29 Mbps |
| HMT-073 | Streptococcus | australis | Named | Oral | | | | 2.13 Mbps |
| HMT-576 | Streptococcus | constellatus | Named | Oral | | | | 1.84 - 1.99 Mbps |
| HMT-578 | Streptococcus | cristatus clade 578 | Named | Oral | | | | 1.98 - 2.08 Mbps |
| HMT-886 | Streptococcus | cristatus clade 886 | Named | Oral | | | | 2.14 Mbps |
| HMT-594 | Streptococcus | downei | Named | Unassigned | | | | 2.24 Mbps |
| HMT-622 | Streptococcus | gordonii | Named | Oral | | | | 2.20 Mbps |
| HMT-431 | Streptococcus | infantis clade 431 | Named | Oral | | | | 2.18 Mbps |
| HMT-638 | Streptococcus | infantis clade 638 | Named | Oral | | | | 1.74 - 1.95 Mbps |
| HMT-644 | Streptococcus | intermedius | Named | Oral | | | | 1.91 - 2.00 Mbps |
| HMT-948 | Streptococcus | lactarius | Named | Oral | | | | 2.14 Mbps |
| HMT-677 | Streptococcus | mitis | Named | Nasal, Oral | | | | 1.71 - 2.25 Mbps |
| HMT-686 | Streptococcus | mutans | Named | Oral | | | | 1.74 - 2.33 Mbps |
| HMT-058 | Streptococcus | oralis subsp. dentisani clade 058 | Named | Oral | | | | 1.85 Mbps |
| HMT-398 | Streptococcus | oralis subsp. dentisani clade 398 | Named | Oral | | | | 1.92 - 2.02 Mbps |
| HMT-707 | Streptococcus | oralis subsp. oralis | Named | Oral | | | | 1.85 - 2.02 Mbps |
| HMT-070 | Streptococcus | oralis subsp. tigurinus clade 070 | Unnamed | Oral | | | | 2.00 Mbps |
| HMT-071 | Streptococcus | oralis subsp. tigurinus clade 071 | Named | Oral | | | | 1.98 Mbps |
| HMT-411 | Streptococcus | parasanguinis clade 411 | Named | Oral | | | | 2.05 Mbps |
| HMT-721 | Streptococcus | parasanguinis clade 721 | Named | Oral | | | | 1.99 - 2.19 Mbps |
| HMT-728 | Streptococcus | peroris | Named | Oral | | | | 1.64 Mbps |
| HMT-734 | Streptococcus | pneumoniae | Named | Nasal | | | | 2.03 - 2.29 Mbps |
| HMT-745 | Streptococcus | pyogenes | Named | Oral | | | | 1.72 - 1.94 Mbps |
| HMT-755 | Streptococcus | salivarius | Named | Oral | | | | 2.05 - 2.43 Mbps |
| HMT-758 | Streptococcus | sanguinis | Named | Oral | | | | 2.07 - 2.43 Mbps |
| HMT-767 | Streptococcus | sinensis | Named | Oral | | | | 2.06 Mbps |
| HMT-768 | Streptococcus | sobrinus | Named | Oral | | | | 2.10 - 2.14 Mbps |
| HMT-056 | Streptococcus | sp. HMT 056 | Unnamed | Oral | | | | 1.94 Mbps |
| HMT-061 | Streptococcus | sp. HMT 061 | Unnamed | Oral | | | | 1.77 Mbps |
| HMT-064 | Streptococcus | sp. HMT 064 | Unnamed | Oral | | | | 2.01 Mbps |
| HMT-066 | Streptococcus | sp. HMT 066 | Unnamed | Oral | | | | 2.23 Mbps |
| HMT-152 | Streptococcus | thermophilus | Named | Unassigned | | | | 1.93 Mbps |
| HMT-021 | Streptococcus | vestibularis | Named | Oral | | | | 1.87 - 2.02 Mbps |
| HMT-613 | Tannerella | forsythia | Named | Oral | | | | 3.28 - 3.41 Mbps |
| HMT-286 | Tannerella | sp. HMT 286 | Unnamed | Oral | | | | 2.67 - 3.48 Mbps |
| HMT-808 | Tannerella | sp. HMT 808 | Phylotype | Oral | | | | 2.70 - 2.78 Mbps |
| HMT-584 | Treponema | denticola | Named | Oral | | | | 2.74 - 2.99 Mbps |
| HMT-653 | Treponema | lecithinolyticum | Named | Oral | | | | 2.34 Mbps |
| HMT-664 | Treponema | maltophilum | Named | Oral | | | | 2.53 Mbps |
| HMT-667 | Treponema | medium | Named | Oral | | | | 2.73 Mbps |
| HMT-805 | Treponema | pallidum | Named | Unassigned | | | | 1.14 - 1.14 Mbps |
| HMT-725 | Treponema | pectinovorum | Named | Oral | | | | 2.14 - 2.32 Mbps |
| HMT-743 | Treponema | putidum | Named | Oral | | | | 2.80 Mbps |
| HMT-769 | Treponema | socranskii | Named | Oral | | | | 2.74 - 2.80 Mbps |
| HMT-029 | Treponema | vincentii | Named | Oral | | | | 2.51 - 2.69 Mbps |
| HMT-832 | Turicella | otitidis | Named | Unassigned | | | | 2.12 Mbps |
| HMT-717 | Variovorax | paradoxus | Named | Unassigned | | | | 6.55 - 7.15 Mbps |
| HMT-524 | Veillonella | atypica | Named | Oral | | | | 2.00 - 2.15 Mbps |
| HMT-887 | Veillonella | denticariosi | Named | Oral | | | | 1.95 Mbps |
| HMT-160 | Veillonella | dispar | Named | Oral | | | | 2.12 - 2.43 Mbps |
| HMT-161 | Veillonella | parvula | Named | Oral | | | | 2.13 - 2.18 Mbps |
| HMT-158 | Veillonella | rogosae | Named | Oral | | | | 2.18 Mbps |
| HMT-780 | Veillonella | sp. HMT 780 | Unnamed | Oral | | | | 1.73 Mbps |
| HMT-827 | Yersinia | pestis | Named | Unassigned | | | | 4.63 - 5.32 Mbps |
