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Post subject: Genome Annotation Update - Selenomonas sp. oral taxon 149 67H29BP, F0410
 Posted: Feb 24, 2016 - 05:34 PM
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Joined: Dec 31, 1969
Posts: 16777215
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Automatic annotation for the genome - Selenomonas sp. oral taxon 149 67H29BP, F0410 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation
Summary of the annotation:
Full Name: Selenomonas sp. oral taxon 149 67H29BP, F0410
SEQ_ID: SEQF1914
Total contigs received: 56
Total bps received: 2429414
Average GC%: 56.8 (of total bps received)
Longest contig: 189503 bps
Shortest contig: 546 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 10
Contigs 1001 - 1500 bps: 4
Contigs > 1500 bps: 42
Total ORFs*: 2349
Total BLASTP hits against NCBI nr: 2309
NCBI nr protein database dated: 2014-12-02
Total BLASTP hits against SwissProt: 1642
SwissProt protein database dated: 2014-12-01
ORFs with KEGG hits: 635
ORFs with GO hits: 223
* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)
Please address your questions to homd_curator@homd.org
~The HOMD Team~ |
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