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Post subject: Genome Annotation Update - Selenomonas noxia ATCC 43541
 Posted: Feb 22, 2016 - 02:33 PM
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Joined: Dec 31, 1969
Posts: 16777215
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Automatic annotation for the genome - Selenomonas noxia ATCC 43541 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation
Summary of the annotation:
Full Name: Selenomonas noxia ATCC 43541
SEQ_ID: SEQF1593
Total contigs received: 56
Total bps received: 2039467
Average GC%: 55.87 (of total bps received)
Longest contig: 290500 bps
Shortest contig: 534 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 8
Contigs 1001 - 1500 bps: 8
Contigs > 1500 bps: 40
Total ORFs*: 1977
Total BLASTP hits against NCBI nr: 1959
NCBI nr protein database dated: 2014-12-02
Total BLASTP hits against SwissProt: 1470
SwissProt protein database dated: 2014-12-01
ORFs with KEGG hits: 568
ORFs with GO hits: 195
* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)
Please address your questions to homd_curator@homd.org
~The HOMD Team~ |
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