| Displaying a total of 791 species (sorted alphabetically): |
| Parent Level | Species* | HMT Taxon ID | Taxon count | Genome count | 16S rRNA Refseq count |
| Candidatus Saccharimonas | aalborgensis | 988 | 1 | 1 | 1 |
| Corynebacterium | accolens | 19 | 1 | 9 | 1 |
| Acidipropionibacterium | acidifaciens | 191 | 1 | 2 | 2 |
| Lactobacillus | acidophilus | 529 | 1 | 9 | 1 |
| Delftia | acidovorans | 23 | 1 | 4 | 2 |
| Cutibacterium | acnes | 530 | 1 | 13 | 2 |
| Aggregatibacter | actinomycetemcomitans | 531 | 1 | 81 | 2 |
| Granulicatella | adiacens | 534 | 1 | 1 | 2 |
| Haemophilus | aegyptius | 535 | 1 | 1 | 1 |
| Rothia | aeria | 188 | 1 | 2 | 2 |
| Klebsiella | aerogenes | 153 | 1 | 1 | 1 |
| Caldilinea | aerophila | 994 | 1 | 1 | 2 |
| Segetibacter | aerophilus | 261 | 1 | 1 | 2 |
| Enhydrobacter | aerosaccus | 196 | 1 | 1 | 1 |
| Pseudomonas | aeruginosa | 536 | 1 | 11 | 1 |
| Micavibrio | aeruginosavorus | 330 | 1 | 1 | 1 |
| Corynebacterium | afermentans | 30 | 1 | 1 | 1 |
| Streptococcus | agalactiae | 537 | 1 | 11 | 1 |
| Pseudoramibacter | alactolyticus | 538 | 1 | 1 | 1 |
| Ignavibacterium | album | 982 | 1 | 1 | 1 |
| Filifactor | alocis | 539 | 1 | 1 | 1 |
| Sneathia | amnii [Not Validly Published] | 844 | 1 | 1 | 1 |
| Corynebacterium | amycolatum | 31 | 1 | 25 | 1 |
| Treponema | amylovorum | 541 | 1 | 0 | 1 |
| Peptostreptococcus | anaerobius | 542 | 1 | 3 | 1 |
| Streptococcus | anginosus | 543 | 1 | 8 | 1 |
| Bifidobacterium | animalis | 895 | 1 | 12 | 2 |
| Bacillus | anthracis | 824 | 1 | 13 | 1 |
| Ochrobactrum | anthropi | 544 | 1 | 2 | 1 |
| Jonquetella | anthropi | 777 | 1 | 2 | 1 |
| Aggregatibacter | aphrophilus | 545 | 1 | 3 | 2 |
| Corynebacterium | appendicis | 33 | 1 | 1 | 1 |
| Schlegelella | aquatica | 26 | 1 | 0 | 1 |
| Selenomonas | artemidis | 124 | 1 | 2 | 3 |
| Porphyromonas | asaccharolytica | 547 | 1 | 2 | 1 |
| Oribacterium | asaccharolyticum | 108 | 1 | 1 | 2 |
| Peptoniphilus | asaccharolyticus | 548 | 1 | 1 | 1 |
| Kluyvera | ascorbata | 865 | 1 | 1 | 2 |
| Veillonella | atypica | 524 | 1 | 3 | 2 |
| Prevotella | aurantiaca | 943 | 1 | 1 | 1 |
| Staphylococcus | aureus | 550 | 1 | 41 | 1 |
| Staphylococcus | auricularis | 331 | 1 | 1 | 1 |
| Corynebacterium | aurimucosum | 34 | 1 | 20 | 1 |
| Streptococcus | australis | 73 | 1 | 1 | 2 |
| Cutibacterium | avidum | 552 | 1 | 2 | 1 |
| Neisseria | bacilliformis | 13 | 1 | 1 | 3 |
| Ruminococcaceae [G-1] | bacterium HMT 075 | 75 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-7] | bacterium HMT 081 | 81 | 1 | 1 | 2 |
| Ruminococcaceae [G-2] | bacterium HMT 085 | 85 | 1 | 0 | 1 |
| Lachnospiraceae [G-7] | bacterium HMT 086 | 86 | 1 | 0 | 1 |
| Lachnospiraceae [G-2] | bacterium HMT 088 | 88 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-2] | bacterium HMT 091 | 91 | 1 | 0 | 1 |
| Clostridiales [F-1][G-1] | bacterium HMT 093 | 93 | 1 | 0 | 1 |
| Lachnospiraceae [G-10] | bacterium HMT 094 | 94 | 1 | 0 | 1 |
| Lachnospiraceae [G-2] | bacterium HMT 096 | 96 | 1 | 1 | 1 |
| Lachnospiraceae [G-3] | bacterium HMT 100 | 100 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-4] | bacterium HMT 103 | 103 | 1 | 0 | 1 |
| Peptoniphilaceae [G-1] | bacterium HMT 113 | 113 | 1 | 1 | 2 |
| Veillonellaceae [G-1] | bacterium HMT 129 | 129 | 1 | 0 | 1 |
| Veillonellaceae [G-1] | bacterium HMT 132 | 132 | 1 | 0 | 1 |
| Veillonellaceae [G-1] | bacterium HMT 135 | 135 | 1 | 0 | 2 |
| Veillonellaceae [G-1] | bacterium HMT 145 | 145 | 1 | 0 | 1 |
| Veillonellaceae [G-1] | bacterium HMT 148 | 148 | 1 | 0 | 1 |
| Veillonellaceae [G-1] | bacterium HMT 150 | 150 | 1 | 0 | 2 |
| Veillonellaceae [G-1] | bacterium HMT 155 | 155 | 1 | 0 | 2 |
| Lachnospiraceae [G-7] | bacterium HMT 163 | 163 | 1 | 0 | 1 |
| Neisseriaceae [G-1] | bacterium HMT 174 | 174 | 1 | 0 | 1 |
| Propionibacteriaceae [G-2] | bacterium HMT 192 | 192 | 1 | 1 | 1 |
| Bacteroidaceae [G-1] | bacterium HMT 272 | 272 | 1 | 1 | 1 |
| Bacteroidales [G-2] | bacterium HMT 274 | 274 | 1 | 1 | 2 |
| Bacteroidetes [G-3] | bacterium HMT 280 | 280 | 1 | 0 | 1 |
| Bacteroidetes [G-3] | bacterium HMT 281 | 281 | 1 | 0 | 1 |
| Neisseriaceae [G-1] | bacterium HMT 327 | 327 | 1 | 0 | 1 |
| Absconditabacteria (SR1) [G-1] | bacterium HMT 345 | 345 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 346 | 346 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 347 | 347 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 348 | 348 | 1 | 2 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 349 | 349 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-2] | bacterium HMT 350 | 350 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-3] | bacterium HMT 351 | 351 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 352 | 352 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 353 | 353 | 1 | 0 | 0 |
| Saccharibacteria (TM7) [G-4] | bacterium HMT 355 | 355 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-5] | bacterium HMT 356 | 356 | 1 | 0 | 2 |
| Saccharibacteria (TM7) [G-3] | bacterium HMT 364 | 364 | 1 | 0 | 0 |
| Bacteroidetes [G-3] | bacterium HMT 365 | 365 | 1 | 0 | 2 |
| Ruminococcaceae [G-3] | bacterium HMT 366 | 366 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-3] | bacterium HMT 367 | 367 | 1 | 0 | 0 |
| Peptostreptococcaceae [XI][G-4] | bacterium HMT 369 | 369 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-3] | bacterium HMT 371 | 371 | 1 | 0 | 0 |
| Ruminococcaceae [G-3] | bacterium HMT 381 | 381 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-8] | bacterium HMT 382 | 382 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-1] | bacterium HMT 383 | 383 | 1 | 0 | 1 |
| Clostridiales [F-1][G-2] | bacterium HMT 402 | 402 | 1 | 0 | 1 |
| Bifidobacteriaceae [G-2] | bacterium HMT 407 | 407 | 1 | 0 | 1 |
| Syntrophomonadaceae [VIII][G-1] | bacterium HMT 435 | 435 | 1 | 0 | 1 |
| Bacteroidetes [G-3] | bacterium HMT 436 | 436 | 1 | 0 | 1 |
| Anaerolineae [G-1] | bacterium HMT 439 | 439 | 1 | 2 | 1 |
| Veillonellaceae [G-1] | bacterium HMT 483 | 483 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 488 | 488 | 1 | 12 | 1 |
| Peptostreptococcaceae [XI][G-5] | bacterium HMT 493 | 493 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-3] | bacterium HMT 495 | 495 | 1 | 0 | 1 |
| Lachnospiraceae [G-8] | bacterium HMT 500 | 500 | 1 | 1 | 2 |
| Bacteroidetes [G-3] | bacterium HMT 503 | 503 | 1 | 0 | 1 |
| Mollicutes [G-1] | bacterium HMT 504 | 504 | 1 | 0 | 1 |
| Bacteroidetes [G-5] | bacterium HMT 505 | 505 | 1 | 0 | 1 |
| Bacteroidetes [G-5] | bacterium HMT 507 | 507 | 1 | 0 | 1 |
| Bacteroidetes [G-4] | bacterium HMT 509 | 509 | 1 | 0 | 1 |
| Bacteroidetes [G-5] | bacterium HMT 511 | 511 | 1 | 0 | 1 |
| Bacteroidetes [G-6] | bacterium HMT 516 | 516 | 1 | 0 | 1 |
| Peptoniphilaceae [G-2] | bacterium HMT 790 | 790 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 869 | 869 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-6] | bacterium HMT 870 | 870 | 1 | 0 | 1 |
| Gracilibacteria (GN02) [G-1] | bacterium HMT 871 | 871 | 1 | 0 | 1 |
| Gracilibacteria (GN02) [G-1] | bacterium HMT 872 | 872 | 1 | 0 | 1 |
| Gracilibacteria (GN02) [G-2] | bacterium HMT 873 | 873 | 1 | 0 | 1 |
| Absconditabacteria (SR1) [G-1] | bacterium HMT 874 | 874 | 1 | 1 | 1 |
| Absconditabacteria (SR1) [G-1] | bacterium HMT 875 | 875 | 1 | 0 | 1 |
| Clostridiales [F-3][G-1] | bacterium HMT 876 | 876 | 1 | 1 | 1 |
| Bacteroidetes [G-3] | bacterium HMT 899 | 899 | 1 | 0 | 1 |
| Erysipelotrichaceae [G-1] | bacterium HMT 904 | 904 | 1 | 0 | 1 |
| Erysipelotrichaceae [G-1] | bacterium HMT 905 | 905 | 1 | 0 | 1 |
| Mollicutes [G-2] | bacterium HMT 906 | 906 | 1 | 0 | 1 |
| Bacteroidetes [G-7] | bacterium HMT 911 | 911 | 1 | 0 | 1 |
| Propionibacteriaceae [G-1] | bacterium HMT 915 | 915 | 1 | 0 | 1 |
| Veillonellaceae [G-1] | bacterium HMT 918 | 918 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-7] | bacterium HMT 922 | 922 | 1 | 0 | 1 |
| Lachnospiraceae [G-9] | bacterium HMT 924 | 924 | 1 | 0 | 1 |
| Peptoniphilaceae [G-3] | bacterium HMT 929 | 929 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-3] | bacterium HMT 950 | 950 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 952 | 952 | 1 | 2 | 1 |
| Saccharibacteria (TM7) [G-7] | bacterium HMT 954 | 954 | 1 | 0 | 1 |
| Saccharibacteria (TM7) [G-8] | bacterium HMT 955 | 955 | 1 | 5 | 1 |
| Saccharibacteria (TM7) [G-1] | bacterium HMT 957 | 957 | 1 | 1 | 1 |
| Saccharibacteria (TM7) [G-7] | bacterium HMT 986 | 986 | 1 | 1 | 1 |
| Saccharibacteria (TM7) [G-7] | bacterium HMT 987 | 987 | 1 | 1 | 1 |
| Saccharibacteria (TM7) [G-7] | bacterium HMT 989 | 989 | 1 | 1 | 1 |
| Absconditabacteria (SR1) [G-2] | bacterium HMT 990 | 990 | 1 | 0 | 0 |
| Absconditabacteria (SR1) [G-3] | bacterium HMT 991 | 991 | 1 | 1 | 0 |
| Gracilibacteria (GN02) [G-3] | bacterium HMT 996 | 996 | 1 | 1 | 1 |
| Gracilibacteria (GN02) [G-4] | bacterium HMT 997 | 997 | 1 | 1 | 0 |
| Victivallales [G-1] | bacterium HMT- 998 | 998 | 1 | 0 | 0 |
| Prevotella | baroniae | 553 | 1 | 3 | 1 |
| Acinetobacter | baumannii | 554 | 1 | 7 | 1 |
| Gemella | bergeri | 555 | 1 | 1 | 1 |
| Prevotella | bivia | 556 | 1 | 5 | 1 |
| Arsenicicoccus | bolidensis | 190 | 1 | 1 | 2 |
| Corynebacterium | bovis | 208 | 1 | 1 | 1 |
| Bifidobacterium | breve | 889 | 1 | 6 | 1 |
| Lactobacillus | brevis | 558 | 1 | 3 | 1 |
| Afipia | broomeae | 559 | 1 | 1 | 1 |
| Prevotella | buccae | 560 | 1 | 2 | 1 |
| Mycoplasma | buccale | 561 | 1 | 0 | 1 |
| Leptotrichia | buccalis | 563 | 1 | 1 | 1 |
| Prevotella | buccalis | 562 | 1 | 3 | 1 |
| Lactobacillus | buchneri | 881 | 1 | 3 | 1 |
| Acidovorax | caeni | 211 | 1 | 1 | 1 |
| Enterobacter | cancerogenus | 565 | 1 | 2 | 1 |
| Staphylococcus | capitis | 116 | 1 | 1 | 2 |
| Staphylococcus | caprae | 567 | 1 | 1 | 1 |
| Rhodobacter | capsulatus | 857 | 1 | 7 | 1 |
| Schaalia | cardiffensis | 850 | 1 | 1 | 1 |
| Lactobacillus | casei | 568 | 1 | 9 | 1 |
| Enterococcus | casseliflavus | 801 | 1 | 3 | 1 |
| Moraxella | catarrhalis | 833 | 1 | 13 | 2 |
| Eggerthia | catenaformis | 569 | 1 | 1 | 1 |
| Porphyromonas | catoniae | 283 | 1 | 2 | 2 |
| Cellulosimicrobium | cellulans | 374 | 1 | 0 | 0 |
| Burkholderia | cepacia | 571 | 1 | 2 | 1 |
| Neisseria | cinerea | 956 | 1 | 1 | 1 |
| Dietzia | cinnamea | 368 | 1 | 2 | 1 |
| Bacillus | clausii | 45 | 1 | 1 | 2 |
| Lawsonella | clevelandensis | 173 | 1 | 1 | 2 |
| Staphylococcus | cohnii | 117 | 1 | 1 | 1 |
| Lactobacillus | coleohominis | 816 | 1 | 1 | 1 |
| Escherichia | coli | 574 | 1 | 52 | 1 |
| Campylobacter | concisus | 575 | 1 | 5 | 1 |
| Streptococcus | constellatus | 576 | 1 | 5 | 1 |
| Eikenella | corrodens | 577 | 1 | 2 | 2 |
| Corynebacterium | coyleae | 341 | 1 | 10 | 4 |
| Lactobacillus | crispatus | 817 | 1 | 5 | 1 |
| Streptococcus | cristatus clade 578 | 578 | 1 | 5 | 1 |
| Streptococcus | cristatus clade 886 | 886 | 1 | 1 | 1 |
| Cryptobacterium | curtum | 579 | 1 | 1 | 1 |
| Campylobacter | curvus | 580 | 1 | 2 | 2 |
| Abiotrophia | defectiva | 389 | 1 | 1 | 1 |
| Kingella | denitrificans | 582 | 1 | 1 | 1 |
| Prevotella | dentalis | 583 | 1 | 1 | 1 |
| Actinomyces | dentalis | 888 | 1 | 1 | 1 |
| Veillonella | denticariosi | 887 | 1 | 1 | 1 |
| Treponema | denticola | 584 | 1 | 18 | 2 |
| Prevotella | denticola | 291 | 1 | 5 | 3 |
| Parascardovia | denticolens | 586 | 1 | 3 | 1 |
| Bifidobacterium | dentium | 588 | 1 | 4 | 1 |
| Rothia | dentocariosa | 587 | 1 | 2 | 1 |
| Selenomonas | dianae | 139 | 1 | 0 | 3 |
| Brevundimonas | diminuta | 590 | 1 | 2 | 1 |
| Corynebacterium | diphtheriae | 591 | 1 | 16 | 1 |
| Veillonella | dispar | 160 | 1 | 2 | 2 |
| Mogibacterium | diversum | 593 | 1 | 1 | 1 |
| Streptococcus | downei | 594 | 1 | 1 | 1 |
| Haemophilus | ducreyi | 821 | 1 | 1 | 1 |
| Enterococcus | durans | 880 | 1 | 3 | 1 |
| Corynebacterium | durum | 595 | 1 | 1 | 3 |
| Acidovorax | ebreus | 209 | 1 | 1 | 1 |
| Sphingomonas | echinoides | 3 | 1 | 1 | 1 |
| Granulicatella | elegans | 596 | 1 | 1 | 2 |
| Bradyrhizobium | elkanii | 597 | 1 | 2 | 1 |
| Neisseria | elongata | 598 | 1 | 1 | 1 |
| Porphyromonas | endodontalis | 273 | 1 | 1 | 4 |
| Prevotella | enoeca | 600 | 1 | 2 | 1 |
| Staphylococcus | epidermidis | 601 | 1 | 10 | 1 |
| Slackia | exigua | 602 | 1 | 1 | 2 |
| Bulleidia | extructa | 603 | 1 | 1 | 1 |
| Enterococcus | faecalis | 604 | 1 | 8 | 1 |
| Desulfovibrio | fairfieldensis | 605 | 1 | 1 | 1 |
| Fretibacterium | fastidiosum | 363 | 1 | 1 | 3 |
| Mycoplasma | faucium | 606 | 1 | 0 | 1 |
| Mycoplasma | fermentans | 607 | 1 | 3 | 1 |
| Lactobacillus | fermentum | 608 | 1 | 5 | 1 |
| Neisseria | flava | 609 | 1 | 0 | 1 |
| Neisseria | flavescens | 610 | 1 | 2 | 1 |
| Microbacterium | flavescens | 186 | 1 | 1 | 1 |
| Anoxybacillus | flavithermus | 182 | 1 | 1 | 1 |
| Selenomonas | flueggei | 125 | 1 | 1 | 2 |
| Pseudomonas | fluorescens | 612 | 1 | 7 | 1 |
| Tannerella | forsythia | 613 | 1 | 2 | 1 |
| Prevotella | fusca | 782 | 1 | 2 | 2 |
| Lysinibacillus | fusiformis | 614 | 1 | 2 | 1 |
| Lactobacillus | gasseri | 615 | 1 | 7 | 1 |
| Anaeroglobus | geminatus | 121 | 1 | 1 | 1 |
| Mycoplasma | genitalium | 616 | 1 | 6 | 1 |
| Schaalia | georgiae | 617 | 1 | 2 | 1 |
| Actinomyces | gerencseriae | 618 | 1 | 1 | 2 |
| Cupriavidus | gilardii | 27 | 1 | 1 | 1 |
| Roseomonas | gilardii | 244 | 1 | 1 | 1 |
| Porphyromonas | gingivalis | 619 | 1 | 64 | 1 |
| Capnocytophaga | gingivalis | 337 | 1 | 1 | 2 |
| Peptidiphaga | gingivicola | 848 | 1 | 1 | 1 |
| Microbacterium | ginsengisoli | 185 | 1 | 1 | 1 |
| Paenibacillus | glucanolyticus | 921 | 1 | 2 | 1 |
| Fusobacterium | gonidiaformans | 860 | 1 | 2 | 1 |
| Neisseria | gonorrhoeae | 621 | 1 | 3 | 1 |
| Leptotrichia | goodfellowii | 845 | 1 | 2 | 1 |
| Streptococcus | gordonii | 622 | 1 | 1 | 1 |
| Campylobacter | gracilis | 623 | 1 | 1 | 1 |
| Actinomyces | graevenitzii | 866 | 1 | 2 | 2 |
| Capnocytophaga | granulosa | 325 | 1 | 1 | 2 |
| Cutibacterium | granulosum | 114 | 1 | 1 | 1 |
| Gemella | haemolysans | 626 | 1 | 2 | 1 |
| Capnocytophaga | haemolytica | 627 | 1 | 1 | 2 |
| Arcanobacterium | haemolyticum | 811 | 1 | 1 | 1 |
| Haemophilus | haemolyticus | 851 | 1 | 8 | 2 |
| Staphylococcus | haemolyticus | 120 | 1 | 1 | 1 |
| Peptoniphilus | harei | 109 | 1 | 3 | 1 |
| Bacteroides | heparinolyticus | 630 | 1 | 1 | 2 |
| Prevotella | histicola | 298 | 1 | 2 | 1 |
| Leptotrichia | hofstadii | 224 | 1 | 2 | 1 |
| Cardiobacterium | hominis | 633 | 1 | 1 | 2 |
| Mycoplasma | hominis | 632 | 1 | 2 | 1 |
| Staphylococcus | hominis | 127 | 1 | 1 | 1 |
| Dermabacter | hominis | 354 | 1 | 2 | 1 |
| Leptotrichia | hongkongensis | 213 | 1 | 1 | 1 |
| Enterobacter | hormaechei | 634 | 1 | 1 | 1 |
| Jeotgalicoccus | huakuii | 243 | 1 | 0 | 1 |
| Fusobacterium | hwasookii | 953 | 1 | 4 | 1 |
| Johnsonella | ignava | 635 | 1 | 1 | 1 |
| Janibacter | indicus | 339 | 1 | 1 | 1 |
| Peptoniphilus | indolicus | 840 | 1 | 1 | 1 |
| Lactobacillus | iners | 838 | 1 | 14 | 1 |
| Streptococcus | infantis clade 431 | 431 | 1 | 1 | 1 |
| Streptococcus | infantis clade 638 | 638 | 1 | 7 | 1 |
| Selenomonas | infelix | 639 | 1 | 1 | 1 |
| Haemophilus | influenzae | 641 | 1 | 24 | 3 |
| Scardovia | inopinata | 642 | 1 | 1 | 1 |
| Prevotella | intermedia | 643 | 1 | 30 | 2 |
| Streptococcus | intermedius | 644 | 1 | 8 | 1 |
| Dialister | invisus | 118 | 1 | 1 | 2 |
| Actinomyces | israelii | 645 | 1 | 1 | 1 |
| Enterococcus | italicus | 803 | 1 | 1 | 1 |
| Corynebacterium | jeikeium | 47 | 1 | 2 | 1 |
| Lactobacillus | jensenii | 839 | 1 | 3 | 1 |
| Lactobacillus | johnsonii | 819 | 1 | 6 | 1 |
| Actinomyces | johnsonii | 849 | 1 | 3 | 1 |
| Acinetobacter | johnsonii | 297 | 1 | 1 | 1 |
| Acinetobacter | junii | 282 | 1 | 1 | 1 |
| Sanguibacter | keddieii | 856 | 1 | 1 | 1 |
| Kingella | kingae | 646 | 1 | 2 | 2 |
| Lactobacillus | kisonensis | 424 | 1 | 1 | 1 |
| Corynebacterium | kroppenstedtii | 49 | 1 | 1 | 1 |
| Peptoniphilus | lacrimalis | 836 | 1 | 3 | 2 |
| Neisseria | lactamica | 649 | 1 | 3 | 1 |
| Streptococcus | lactarius | 948 | 1 | 0 | 1 |
| Lactococcus | lactis | 804 | 1 | 13 | 2 |
| Anaerococcus | lactolyticus | 859 | 1 | 1 | 1 |
| Capnocytophaga | leadbetteri | 329 | 1 | 1 | 3 |
| Treponema | lecithinolyticum | 653 | 1 | 1 | 1 |
| Eggerthella | lenta | 654 | 1 | 1 | 1 |
| Mycobacterium | leprae | 823 | 1 | 2 | 1 |
| Chlorobium | limicola | 984 | 1 | 1 | 2 |
| Eubacterium | limosum | 655 | 1 | 1 | 1 |
| Moraxella | lincolnii | 154 | 1 | 1 | 3 |
| Schaalia | lingnae [Not Validly Published] | 181 | 1 | 1 | 3 |
| Mycoplasma | lipophilum | 656 | 1 | 0 | 1 |
| Prevotella | loescheii | 658 | 1 | 1 | 1 |
| Stomatobaculum | longum | 419 | 1 | 1 | 1 |
| Bifidobacterium | longum | 862 | 1 | 14 | 1 |
| Mesorhizobium | loti | 659 | 1 | 3 | 1 |
| Staphylococcus | lugdunensis | 128 | 1 | 1 | 1 |
| Defluvibacter | lusatiensis | 660 | 1 | 0 | 1 |
| Pseudomonas | luteola | 344 | 1 | 1 | 1 |
| Micrococcus | luteus | 87 | 1 | 1 | 1 |
| Acinetobacter | lwoffii | 5 | 1 | 1 | 1 |
| Neisseria | macacae | 99 | 1 | 1 | 1 |
| Corynebacterium | macginleyi | 50 | 1 | 3 | 1 |
| Prevotella | maculosa | 289 | 1 | 3 | 3 |
| Finegoldia | magna | 662 | 1 | 6 | 2 |
| Stenotrophomonas | maltophilia | 663 | 1 | 7 | 1 |
| Treponema | maltophilum | 664 | 1 | 1 | 2 |
| Serratia | marcescens | 115 | 1 | 1 | 1 |
| Prevotella | marshii | 665 | 1 | 2 | 1 |
| Corynebacterium | massiliense | 333 | 1 | 1 | 1 |
| Actinomyces | massiliensis | 852 | 1 | 2 | 1 |
| Corynebacterium | mastitidis | 328 | 1 | 1 | 2 |
| Corynebacterium | matruchotii | 666 | 1 | 2 | 3 |
| Treponema | medium | 667 | 1 | 1 | 1 |
| Prevotella | melaninogenica | 469 | 1 | 3 | 1 |
| Neisseria | meningitidis | 669 | 1 | 13 | 1 |
| Schaalia | meyeri | 671 | 1 | 1 | 1 |
| Prevotella | micans | 378 | 1 | 3 | 1 |
| Parvimonas | micra | 111 | 1 | 1 | 3 |
| Dialister | micraerophilus | 843 | 1 | 1 | 1 |
| Megasphaera | micronuciformis | 122 | 1 | 1 | 2 |
| Corynebacterium | minutissimum | 53 | 1 | 2 | 1 |
| Atopobium | minutum | 674 | 1 | 1 | 1 |
| Lautropia | mirabilis | 22 | 1 | 1 | 2 |
| Proteus | mirabilis | 676 | 1 | 5 | 1 |
| Haematobacter | missouriensis | 316 | 1 | 1 | 1 |
| Streptococcus | mitis | 677 | 1 | 134 | 1 |
| Listeria | monocytogenes | 825 | 1 | 23 | 1 |
| Solobacterium | moorei | 678 | 1 | 2 | 1 |
| Catonella | morbi | 165 | 1 | 1 | 2 |
| Gemella | morbillorum | 46 | 1 | 1 | 2 |
| Corynebacterium | mucifaciens | 835 | 1 | 1 | 1 |
| Rothia | mucilaginosa | 681 | 1 | 3 | 1 |
| Neisseria | mucosa | 682 | 1 | 2 | 1 |
| Roseomonas | mucosa | 245 | 1 | 1 | 1 |
| Simonsiella | muelleri | 683 | 1 | 1 | 1 |
| Mobiluncus | mulieris | 830 | 1 | 4 | 1 |
| Mitsuokella | multacida | 684 | 1 | 1 | 1 |
| Prevotella | multiformis | 685 | 1 | 1 | 1 |
| Prevotella | multisaccharivorax | 794 | 1 | 1 | 1 |
| Streptococcus | mutans | 686 | 1 | 247 | 1 |
| Actinomyces | naeslundii | 176 | 1 | 1 | 3 |
| Prevotella | nanceiensis | 299 | 1 | 1 | 1 |
| Fusobacterium | naviforme | 689 | 1 | 3 | 1 |
| Fusobacterium | necrophorum | 690 | 1 | 5 | 1 |
| Mogibacterium | neglectum | 691 | 1 | 0 | 1 |
| Mycobacterium | neoaurum | 692 | 1 | 1 | 1 |
| Prevotella | nigrescens | 693 | 1 | 3 | 2 |
| Stenotrophomonas | nitritireducens | 37 | 1 | 1 | 1 |
| Moraxella | nonliquefaciens | 98 | 1 | 1 | 2 |
| Selenomonas | noxia | 130 | 1 | 2 | 2 |
| Fusobacterium | nucleatum subsp. animalis | 420 | 1 | 10 | 2 |
| Fusobacterium | nucleatum subsp. nucleatum | 698 | 1 | 4 | 1 |
| Fusobacterium | nucleatum subsp. polymorphum | 202 | 1 | 7 | 1 |
| Fusobacterium | nucleatum subsp. vincentii | 200 | 1 | 5 | 4 |
| Capnocytophaga | ochracea | 700 | 1 | 3 | 1 |
| Anaerococcus | octavius | 17 | 1 | 2 | 5 |
| Schaalia | odontolytica | 701 | 1 | 4 | 1 |
| Alloscardovia | omnicolens | 198 | 1 | 2 | 2 |
| Desulfomicrobium | orale | 703 | 1 | 1 | 1 |
| Lachnoanaerobaculum | orale | 82 | 1 | 1 | 2 |
| Mycoplasma | orale | 704 | 1 | 1 | 1 |
| Kingella | oralis | 706 | 1 | 1 | 1 |
| Neisseria | oralis | 14 | 1 | 1 | 2 |
| Prevotella | oralis | 705 | 1 | 3 | 2 |
| Methanobrevibacter | oralis | 815 | 1 | 3 | 3 |
| Streptococcus | oralis subsp. dentisani clade 058 | 58 | 1 | 1 | 3 |
| Streptococcus | oralis subsp. dentisani clade 398 | 398 | 1 | 2 | 2 |
| Streptococcus | oralis subsp. oralis | 707 | 1 | 11 | 1 |
| Streptococcus | oralis subsp. tigurinus clade 070 | 70 | 1 | 1 | 2 |
| Streptococcus | oralis subsp. tigurinus clade 071 | 71 | 1 | 1 | 3 |
| Actinomyces | oricola | 708 | 1 | 1 | 1 |
| Lactobacillus | oris | 709 | 1 | 2 | 1 |
| Prevotella | oris | 311 | 1 | 3 | 2 |
| Actinomyces | oris | 893 | 1 | 2 | 2 |
| Moraxella | osloensis | 711 | 1 | 1 | 1 |
| Turicella | otitidis | 832 | 1 | 1 | 1 |
| Pseudomonas | otitidis | 834 | 1 | 1 | 1 |
| Alloiococcus | otitis | 831 | 1 | 1 | 1 |
| Prevotella | oulorum | 288 | 1 | 2 | 2 |
| Prevotella | pallens | 714 | 1 | 1 | 1 |
| Treponema | pallidum | 805 | 1 | 9 | 1 |
| Kocuria | palustris | 84 | 1 | 1 | 1 |
| Novosphingobium | panipatense | 342 | 1 | 1 | 1 |
| Lactobacillus | panis | 882 | 1 | 1 | 1 |
| Lactobacillus | paracasei | 716 | 1 | 6 | 1 |
| Variovorax | paradoxus | 717 | 1 | 3 | 1 |
| Lactobacillus | parafarraginis | 418 | 1 | 1 | 1 |
| Haemophilus | parahaemolyticus | 945 | 1 | 1 | 2 |
| Haemophilus | parainfluenzae | 718 | 1 | 12 | 2 |
| Haemophilus | paraphrohaemolyticus | 35 | 1 | 1 | 2 |
| Aggregatibacter | paraphrophilus | 720 | 1 | 1 | 1 |
| Streptococcus | parasanguinis clade 411 | 411 | 1 | 1 | 4 |
| Streptococcus | parasanguinis clade 721 | 721 | 1 | 6 | 1 |
| Veillonella | parvula | 161 | 1 | 4 | 5 |
| Atopobium | parvulum | 723 | 1 | 2 | 1 |
| Oribacterium | parvum | 934 | 1 | 1 | 2 |
| Treponema | parvum | 724 | 1 | 0 | 1 |
| Porphyromonas | pasteri | 279 | 1 | 1 | 6 |
| Staphylococcus | pasteuri | 141 | 1 | 1 | 1 |
| Brevibacterium | paucivorans | 340 | 1 | 1 | 2 |
| Treponema | pectinovorum | 725 | 1 | 5 | 1 |
| Lactobacillus | pentosus | 883 | 1 | 1 | 1 |
| Neisseria | perflava | 101 | 1 | 2 | 1 |
| Fusobacterium | periodonticum | 201 | 1 | 4 | 2 |
| Centipeda | periodontii | 726 | 1 | 1 | 1 |
| Streptococcus | peroris | 728 | 1 | 1 | 1 |
| Bordetella | pertussis | 828 | 1 | 2 | 1 |
| Yersinia | pestis | 827 | 1 | 25 | 1 |
| Staphylococcus | pettenkoferi | 142 | 1 | 1 | 1 |
| Paenibacillus | phoenicis | 786 | 1 | 1 | 1 |
| Ralstonia | pickettii | 854 | 1 | 4 | 1 |
| Dolosigranulum | pigrum | 813 | 1 | 1 | 1 |
| Corynebacterium | pilbarense | 54 | 1 | 2 | 1 |
| Pyramidobacter | piscolens | 357 | 1 | 1 | 3 |
| Haemophilus | pittmaniae | 946 | 1 | 1 | 1 |
| Lactobacillus | plantarum | 861 | 1 | 10 | 1 |
| Arthrospira | platensis | 229 | 1 | 1 | 2 |
| Prevotella | pleuritidis | 303 | 1 | 1 | 1 |
| Klebsiella | pneumoniae | 731 | 1 | 6 | 3 |
| Streptococcus | pneumoniae | 734 | 1 | 52 | 1 |
| Mycoplasma | pneumoniae | 732 | 1 | 4 | 1 |
| Chlamydophila | pneumoniae | 733 | 1 | 5 | 1 |
| Dialister | pneumosintes | 736 | 1 | 1 | 1 |
| Neisseria | polysaccharea | 737 | 1 | 1 | 1 |
| Anaerococcus | prevotii | 738 | 1 | 2 | 1 |
| Olsenella | profusa | 806 | 1 | 1 | 1 |
| Corynebacterium | propinquum | 59 | 1 | 1 | 1 |
| Arachnia | propionica | 739 | 1 | 2 | 1 |
| Pseudomonas | pseudoalcaligenes | 740 | 1 | 3 | 1 |
| Corynebacterium | pseudodiphtheriticum | 60 | 1 | 3 | 1 |
| Mogibacterium | pumilum | 742 | 1 | 1 | 1 |
| Treponema | putidum | 743 | 1 | 1 | 1 |
| Helicobacter | pylori | 812 | 1 | 12 | 1 |
| Streptococcus | pyogenes | 745 | 1 | 17 | 1 |
| Bacteroides | pyogenes | 787 | 1 | 5 | 1 |
| Actinomyces | radicidentis | 746 | 1 | 1 | 1 |
| Acinetobacter | radioresistens | 10 | 1 | 1 | 1 |
| Erythromicrobium | ramosum | 747 | 1 | 1 | 1 |
| Lactobacillus | rapi | 884 | 1 | 1 | 1 |
| Alloprevotella | rava | 302 | 1 | 1 | 2 |
| Campylobacter | rectus | 748 | 1 | 1 | 2 |
| Lactobacillus | reuteri clade 818 | 818 | 1 | 9 | 1 |
| Lactobacillus | reuteri clade 938 | 938 | 1 | 0 | 1 |
| Lactobacillus | rhamnosus | 749 | 1 | 12 | 1 |
| Kocuria | rhizophila | 197 | 1 | 1 | 1 |
| Atopobium | rimae | 750 | 1 | 2 | 1 |
| Veillonella | rogosae | 158 | 1 | 1 | 2 |
| Melioribacter | roseus | 983 | 1 | 1 | 1 |
| Arachnia | rubra | 194 | 1 | 0 | 1 |
| Lachnoanaerobaculum | saburreum | 494 | 1 | 2 | 2 |
| Prevotella | saccharolytica | 781 | 1 | 2 | 2 |
| Enterococcus | saccharolyticus | 802 | 1 | 2 | 1 |
| Cronobacter | sakazakii | 753 | 1 | 5 | 1 |
| Prevotella | salivae | 307 | 1 | 2 | 1 |
| Mycoplasma | salivarium | 754 | 1 | 1 | 1 |
| Lactobacillus | salivarius | 756 | 1 | 8 | 1 |
| Streptococcus | salivarius | 755 | 1 | 8 | 2 |
| Sneathia | sanguinegens | 837 | 1 | 1 | 1 |
| Gemella | sanguinis | 757 | 1 | 1 | 1 |
| Streptococcus | sanguinis | 758 | 1 | 13 | 1 |
| Fastidiosipila | sanguinis | 935 | 1 | 1 | 1 |
| Shuttleworthia | satelles | 95 | 1 | 1 | 1 |
| Bifidobacterium | scardovii | 891 | 1 | 1 | 1 |
| Staphylococcus | schleiferi | 233 | 1 | 1 | 1 |
| Bartonella | schoenbuchensis | 1 | 1 | 1 | 1 |
| Prevotella | scopos | 885 | 1 | 2 | 1 |
| Kytococcus | sedentarius | 855 | 1 | 1 | 1 |
| Aggregatibacter | segnis | 762 | 1 | 1 | 1 |
| Leptotrichia | shahii | 214 | 1 | 1 | 1 |
| Prevotella | shahii | 795 | 1 | 1 | 1 |
| Campylobacter | showae | 763 | 1 | 3 | 1 |
| Neisseria | sicca | 764 | 1 | 2 | 1 |
| Corynebacterium | simulans | 62 | 1 | 8 | 1 |
| Streptococcus | sinensis | 767 | 1 | 1 | 1 |
| Corynebacterium | singulare | 63 | 1 | 2 | 1 |
| Oribacterium | sinus | 457 | 1 | 1 | 1 |
| Streptococcus | sobrinus | 768 | 1 | 2 | 1 |
| Treponema | socranskii | 769 | 1 | 2 | 6 |
| Afipia | sp. genotype 4 | 652 | 1 | 0 | 1 |
| Caulobacter | sp. HMT 002 | 2 | 1 | 0 | 1 |
| Sphingomonas | sp. HMT 004 | 4 | 1 | 0 | 1 |
| Sphingomonas | sp. HMT 006 | 6 | 1 | 0 | 1 |
| Eikenella | sp. HMT 011 | 11 | 1 | 0 | 1 |
| Kingella | sp. HMT 012 | 12 | 1 | 0 | 3 |
| Neisseria | sp. HMT 018 | 18 | 1 | 0 | 1 |
| Neisseria | sp. HMT 020 | 20 | 1 | 1 | 2 |
| Leptothrix | sp. HMT 025 | 25 | 1 | 0 | 1 |
| Rhodocyclus | sp. HMT 028 | 28 | 1 | 0 | 1 |
| Pseudomonas | sp. HMT 032 | 32 | 1 | 0 | 1 |
| Haemophilus | sp. HMT 036 | 36 | 1 | 2 | 2 |
| Bdellovibrio | sp. HMT 039 | 39 | 1 | 0 | 1 |
| Desulfovibrio | sp. HMT 040 | 40 | 1 | 0 | 1 |
| Desulfobulbus | sp. HMT 041 | 41 | 1 | 2 | 1 |
| Campylobacter | sp. HMT 044 | 44 | 1 | 0 | 1 |
| Paenibacillus | sp. HMT 048 | 48 | 1 | 0 | 1 |
| Lactobacillus | sp. HMT 052 | 52 | 1 | 0 | 1 |
| Streptococcus | sp. HMT 056 | 56 | 1 | 1 | 1 |
| Streptococcus | sp. HMT 057 | 57 | 1 | 0 | 1 |
| Streptococcus | sp. HMT 061 | 61 | 1 | 1 | 1 |
| Streptococcus | sp. HMT 064 | 64 | 1 | 1 | 1 |
| Streptococcus | sp. HMT 066 | 66 | 1 | 1 | 2 |
| Streptococcus | sp. HMT 074 | 74 | 1 | 0 | 1 |
| Oribacterium | sp. HMT 078 | 78 | 1 | 2 | 4 |
| Butyrivibrio | sp. HMT 080 | 80 | 1 | 0 | 1 |
| Lachnoanaerobaculum | sp. HMT 083 | 83 | 1 | 1 | 2 |
| Lachnoanaerobaculum | sp. HMT 089 | 89 | 1 | 0 | 1 |
| Butyrivibrio | sp. HMT 090 | 90 | 1 | 0 | 1 |
| Stomatobaculum | sp. HMT 097 | 97 | 1 | 0 | 1 |
| Oribacterium | sp. HMT 102 | 102 | 1 | 1 | 2 |
| Parvimonas | sp. HMT 110 | 110 | 1 | 1 | 2 |
| Dialister | sp. HMT 119 | 119 | 1 | 0 | 1 |
| Megasphaera | sp. HMT 123 | 123 | 1 | 0 | 2 |
| Selenomonas | sp. HMT 126 | 126 | 1 | 1 | 2 |
| Mitsuokella | sp. HMT 131 | 131 | 1 | 1 | 2 |
| Selenomonas | sp. HMT 133 | 133 | 1 | 1 | 1 |
| Selenomonas | sp. HMT 134 | 134 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 136 | 136 | 1 | 1 | 2 |
| Selenomonas | sp. HMT 137 | 137 | 1 | 1 | 1 |
| Selenomonas | sp. HMT 138 | 138 | 1 | 1 | 1 |
| Selenomonas | sp. HMT 146 | 146 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 149 | 149 | 1 | 1 | 2 |
| Catonella | sp. HMT 164 | 164 | 1 | 0 | 1 |
| Johnsonella | sp. HMT 166 | 166 | 1 | 0 | 1 |
| Peptococcus | sp. HMT 167 | 167 | 1 | 0 | 2 |
| Peptococcus | sp. HMT 168 | 168 | 1 | 0 | 1 |
| Actinomyces | sp. HMT 169 | 169 | 1 | 1 | 3 |
| Actinomyces | sp. HMT 170 | 170 | 1 | 1 | 1 |
| Actinomyces | sp. HMT 171 | 171 | 1 | 2 | 2 |
| Schaalia | sp. HMT 172 | 172 | 1 | 1 | 1 |
| Actinomyces | sp. HMT 175 | 175 | 1 | 1 | 2 |
| Schaalia | sp. HMT 178 | 178 | 1 | 1 | 1 |
| Schaalia | sp. HMT 180 | 180 | 1 | 1 | 3 |
| Peptidiphaga | sp. HMT 183 | 183 | 1 | 1 | 2 |
| Peptoniphilus | sp. HMT 187 | 187 | 1 | 1 | 1 |
| Kocuria | sp. HMT 189 | 189 | 1 | 0 | 1 |
| Cutibacterium | sp. HMT 193 | 193 | 1 | 1 | 1 |
| Atopobium | sp. HMT 199 | 199 | 1 | 1 | 1 |
| Fusobacterium | sp. HMT 203 | 203 | 1 | 2 | 3 |
| Fusobacterium | sp. HMT 204 | 204 | 1 | 0 | 1 |
| Fusobacterium | sp. HMT 205 | 205 | 1 | 0 | 1 |
| Bergeyella | sp. HMT 206 | 206 | 1 | 0 | 1 |
| Corynebacterium | sp. HMT 207 | 207 | 1 | 4 | 1 |
| Leptotrichia | sp. HMT 212 | 212 | 1 | 1 | 1 |
| Leptotrichia | sp. HMT 215 | 215 | 1 | 1 | 1 |
| Leptotrichia | sp. HMT 217 | 217 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 218 | 218 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 219 | 219 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 221 | 221 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 223 | 223 | 1 | 1 | 1 |
| Leptotrichia | sp. HMT 225 | 225 | 1 | 1 | 2 |
| Treponema | sp. HMT 226 | 226 | 1 | 0 | 1 |
| Treponema | sp. HMT 227 | 227 | 1 | 0 | 1 |
| Treponema | sp. HMT 228 | 228 | 1 | 0 | 1 |
| Treponema | sp. HMT 230 | 230 | 1 | 0 | 2 |
| Treponema | sp. HMT 231 | 231 | 1 | 0 | 1 |
| Treponema | sp. HMT 232 | 232 | 1 | 0 | 1 |
| Treponema | sp. HMT 234 | 234 | 1 | 0 | 1 |
| Treponema | sp. HMT 235 | 235 | 1 | 0 | 1 |
| Treponema | sp. HMT 236 | 236 | 1 | 0 | 1 |
| Treponema | sp. HMT 237 | 237 | 1 | 0 | 4 |
| Treponema | sp. HMT 238 | 238 | 1 | 0 | 1 |
| Treponema | sp. HMT 239 | 239 | 1 | 0 | 2 |
| Treponema | sp. HMT 242 | 242 | 1 | 0 | 1 |
| Treponema | sp. HMT 246 | 246 | 1 | 0 | 1 |
| Treponema | sp. HMT 247 | 247 | 1 | 0 | 1 |
| Fusobacterium | sp. HMT 248 | 248 | 1 | 1 | 1 |
| Treponema | sp. HMT 249 | 249 | 1 | 0 | 1 |
| Treponema | sp. HMT 250 | 250 | 1 | 0 | 1 |
| Treponema | sp. HMT 251 | 251 | 1 | 0 | 1 |
| Treponema | sp. HMT 252 | 252 | 1 | 0 | 1 |
| Treponema | sp. HMT 253 | 253 | 1 | 0 | 1 |
| Treponema | sp. HMT 254 | 254 | 1 | 0 | 1 |
| Treponema | sp. HMT 256 | 256 | 1 | 0 | 1 |
| Treponema | sp. HMT 257 | 257 | 1 | 0 | 1 |
| Treponema | sp. HMT 258 | 258 | 1 | 0 | 1 |
| Haemophilus | sp. HMT 259 | 259 | 1 | 0 | 2 |
| Treponema | sp. HMT 260 | 260 | 1 | 0 | 1 |
| Treponema | sp. HMT 262 | 262 | 1 | 0 | 1 |
| Treponema | sp. HMT 263 | 263 | 1 | 0 | 1 |
| Treponema | sp. HMT 264 | 264 | 1 | 0 | 1 |
| Treponema | sp. HMT 265 | 265 | 1 | 0 | 1 |
| Leptothrix | sp. HMT 266 | 266 | 1 | 0 | 1 |
| Treponema | sp. HMT 268 | 268 | 1 | 0 | 2 |
| Treponema | sp. HMT 269 | 269 | 1 | 0 | 1 |
| Treponema | sp. HMT 270 | 270 | 1 | 0 | 1 |
| Treponema | sp. HMT 271 | 271 | 1 | 0 | 1 |
| Porphyromonas | sp. HMT 275 | 275 | 1 | 0 | 1 |
| Moraxella | sp. HMT 276 | 276 | 1 | 0 | 1 |
| Porphyromonas | sp. HMT 277 | 277 | 1 | 0 | 1 |
| Porphyromonas | sp. HMT 278 | 278 | 1 | 1 | 1 |
| Porphyromonas | sp. HMT 284 | 284 | 1 | 0 | 1 |
| Porphyromonas | sp. HMT 285 | 285 | 1 | 0 | 1 |
| Tannerella | sp. HMT 286 | 286 | 1 | 7 | 1 |
| Anaerococcus | sp. HMT 290 | 290 | 1 | 0 | 1 |
| Prevotella | sp. HMT 292 | 292 | 1 | 0 | 2 |
| Prevotella | sp. HMT 293 | 293 | 1 | 0 | 1 |
| Anaerococcus | sp. HMT 294 | 294 | 1 | 0 | 1 |
| Anaerococcus | sp. HMT 295 | 295 | 1 | 0 | 1 |
| Prevotella | sp. HMT 300 | 300 | 1 | 0 | 3 |
| Prevotella | sp. HMT 301 | 301 | 1 | 0 | 1 |
| Prevotella | sp. HMT 304 | 304 | 1 | 0 | 1 |
| Prevotella | sp. HMT 305 | 305 | 1 | 0 | 2 |
| Prevotella | sp. HMT 306 | 306 | 1 | 1 | 1 |
| Alloprevotella | sp. HMT 308 | 308 | 1 | 0 | 1 |
| Prevotella | sp. HMT 309 | 309 | 1 | 0 | 2 |
| Prevotella | sp. HMT 313 | 313 | 1 | 1 | 2 |
| Prevotella | sp. HMT 314 | 314 | 1 | 1 | 1 |
| Prevotella | sp. HMT 315 | 315 | 1 | 0 | 2 |
| Prevotella | sp. HMT 317 | 317 | 1 | 1 | 2 |
| Pedobacter | sp. HMT 318 | 318 | 1 | 0 | 1 |
| Bergeyella | sp. HMT 319 | 319 | 1 | 0 | 1 |
| Flavitalea | sp. HMT 320 | 320 | 1 | 0 | 1 |
| Pedobacter | sp. HMT 321 | 321 | 1 | 0 | 1 |
| Bergeyella | sp. HMT 322 | 322 | 1 | 0 | 1 |
| Capnocytophaga | sp. HMT 323 | 323 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 324 | 324 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 326 | 326 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 332 | 332 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 334 | 334 | 1 | 0 | 1 |
| Capnocytophaga | sp. HMT 335 | 335 | 1 | 1 | 2 |
| Capnocytophaga | sp. HMT 336 | 336 | 1 | 1 | 3 |
| Capnocytophaga | sp. HMT 338 | 338 | 1 | 1 | 1 |
| Fretibacterium | sp. HMT 358 | 358 | 1 | 0 | 1 |
| Fretibacterium | sp. HMT 359 | 359 | 1 | 0 | 1 |
| Fretibacterium | sp. HMT 360 | 360 | 1 | 0 | 1 |
| Fretibacterium | sp. HMT 361 | 361 | 1 | 0 | 3 |
| Fretibacterium | sp. HMT 362 | 362 | 1 | 0 | 2 |
| Fusobacterium | sp. HMT 370 | 370 | 1 | 1 | 1 |
| Stomatobaculum | sp. HMT 373 | 373 | 1 | 0 | 1 |
| Peptoniphilus | sp. HMT 375 | 375 | 1 | 1 | 1 |
| Prevotella | sp. HMT 376 | 376 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 380 | 380 | 1 | 1 | 1 |
| Peptoniphilus | sp. HMT 386 | 386 | 1 | 1 | 1 |
| Selenomonas | sp. HMT 388 | 388 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 392 | 392 | 1 | 0 | 1 |
| Parvimonas | sp. HMT 393 | 393 | 1 | 1 | 1 |
| Prevotella | sp. HMT 396 | 396 | 1 | 0 | 1 |
| Ralstonia | sp. HMT 406 | 406 | 1 | 0 | 1 |
| Acinetobacter | sp. HMT 408 | 408 | 1 | 0 | 1 |
| Capnocytophaga | sp. HMT 412 | 412 | 1 | 1 | 2 |
| Actinomyces | sp. HMT 414 | 414 | 1 | 1 | 1 |
| Atopobium | sp. HMT 416 | 416 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 417 | 417 | 1 | 1 | 1 |
| Bergeyella | sp. HMT 422 | 422 | 1 | 0 | 2 |
| Streptococcus | sp. HMT 423 | 423 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 442 | 442 | 1 | 0 | 1 |
| Prevotella | sp. HMT 443 | 443 | 1 | 0 | 1 |
| Actinomyces | sp. HMT 448 | 448 | 1 | 1 | 2 |
| Catonella | sp. HMT 451 | 451 | 1 | 0 | 1 |
| Butyrivibrio | sp. HMT 455 | 455 | 1 | 0 | 1 |
| Aggregatibacter | sp. HMT 458 | 458 | 1 | 1 | 1 |
| Kingella | sp. HMT 459 | 459 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 463 | 463 | 1 | 0 | 1 |
| Prevotella | sp. HMT 472 | 472 | 1 | 1 | 2 |
| Alloprevotella | sp. HMT 473 | 473 | 1 | 1 | 2 |
| Prevotella | sp. HMT 475 | 475 | 1 | 0 | 2 |
| Selenomonas | sp. HMT 478 | 478 | 1 | 1 | 2 |
| Selenomonas | sp. HMT 479 | 479 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 481 | 481 | 1 | 0 | 2 |
| Treponema | sp. HMT 490 | 490 | 1 | 0 | 2 |
| Lachnoanaerobaculum | sp. HMT 496 | 496 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 498 | 498 | 1 | 1 | 1 |
| Neisseria | sp. HMT 499 | 499 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 501 | 501 | 1 | 0 | 1 |
| Treponema | sp. HMT 508 | 508 | 1 | 0 | 1 |
| Aggregatibacter | sp. HMT 512 | 512 | 1 | 0 | 1 |
| Aggregatibacter | sp. HMT 513 | 513 | 1 | 0 | 1 |
| Prevotella | sp. HMT 515 | 515 | 1 | 0 | 1 |
| Treponema | sp. HMT 517 | 517 | 1 | 0 | 1 |
| Treponema | sp. HMT 518 | 518 | 1 | 0 | 1 |
| Mitsuokella | sp. HMT 521 | 521 | 1 | 0 | 2 |
| Neisseria | sp. HMT 523 | 523 | 1 | 0 | 1 |
| Actinomyces | sp. HMT 525 | 525 | 1 | 0 | 1 |
| Prevotella | sp. HMT 526 | 526 | 1 | 0 | 2 |
| Veillonella | sp. HMT 780 | 780 | 1 | 1 | 2 |
| Olsenella | sp. HMT 807 | 807 | 1 | 1 | 1 |
| Tannerella | sp. HMT 808 | 808 | 1 | 3 | 1 |
| Olsenella | sp. HMT 809 | 809 | 1 | 1 | 1 |
| Atopobium | sp. HMT 810 | 810 | 1 | 1 | 2 |
| Prevotella | sp. HMT 820 | 820 | 1 | 1 | 1 |
| Megasphaera | sp. HMT 841 | 841 | 1 | 0 | 1 |
| Leptotrichia | sp. HMT 847 | 847 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 863 | 863 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 864 | 864 | 1 | 1 | 2 |
| Schaalia | sp. HMT 877 | 877 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 878 | 878 | 1 | 1 | 1 |
| Leptotrichia | sp. HMT 879 | 879 | 1 | 1 | 1 |
| Selenomonas | sp. HMT 892 | 892 | 1 | 1 | 1 |
| Ottowia | sp. HMT 894 | 894 | 1 | 1 | 2 |
| Actinomyces | sp. HMT 896 | 896 | 1 | 0 | 1 |
| Actinomyces | sp. HMT 897 | 897 | 1 | 1 | 1 |
| Aggregatibacter | sp. HMT 898 | 898 | 1 | 0 | 2 |
| Bergeyella | sp. HMT 900 | 900 | 1 | 0 | 1 |
| Capnocytophaga | sp. HMT 901 | 901 | 1 | 0 | 1 |
| Capnocytophaga | sp. HMT 902 | 902 | 1 | 1 | 1 |
| Capnocytophaga | sp. HMT 903 | 903 | 1 | 1 | 1 |
| Bergeyella | sp. HMT 907 | 907 | 1 | 0 | 1 |
| Haemophilus | sp. HMT 908 | 908 | 1 | 0 | 2 |
| Leptotrichia | sp. HMT 909 | 909 | 1 | 0 | 1 |
| Stomatobaculum | sp. HMT 910 | 910 | 1 | 0 | 1 |
| Alloprevotella | sp. HMT 912 | 912 | 1 | 0 | 2 |
| Alloprevotella | sp. HMT 913 | 913 | 1 | 0 | 1 |
| Alloprevotella | sp. HMT 914 | 914 | 1 | 0 | 1 |
| Tannerella | sp. HMT 916 | 916 | 1 | 0 | 1 |
| Veillonella | sp. HMT 917 | 917 | 1 | 0 | 2 |
| Selenomonas | sp. HMT 919 | 919 | 1 | 0 | 2 |
| Selenomonas | sp. HMT 920 | 920 | 1 | 1 | 1 |
| Treponema | sp. HMT 927 | 927 | 1 | 0 | 1 |
| Gemella | sp. HMT 928 | 928 | 1 | 1 | 1 |
| Porphyromonas | sp. HMT 930 | 930 | 1 | 0 | 1 |
| Bergeyella | sp. HMT 931 | 931 | 1 | 0 | 1 |
| Kingella | sp. HMT 932 | 932 | 1 | 0 | 1 |
| Pedobacter | sp. HMT 933 | 933 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 936 | 936 | 1 | 0 | 1 |
| Selenomonas | sp. HMT 937 | 937 | 1 | 0 | 1 |
| Olsenella | sp. HMT 939 | 939 | 1 | 0 | 1 |
| Prevotella | sp. HMT 942 | 942 | 1 | 0 | 1 |
| Aggregatibacter | sp. HMT 949 | 949 | 1 | 0 | 1 |
| Treponema | sp. HMT 951 | 951 | 1 | 0 | 1 |
| WPS-2 [G-1] | sp. HMT 999 | 999 | 1 | 1 | 0 |
| Selenomonas | sputigena | 151 | 1 | 1 | 3 |
| Capnocytophaga | sputigena | 775 | 1 | 1 | 2 |
| Campylobacter | sputorum | 776 | 1 | 1 | 1 |
| Haemophilus | sputorum | 944 | 1 | 1 | 1 |
| Peptostreptococcus | stomatis | 112 | 1 | 1 | 2 |
| Corynebacterium | striatum | 72 | 1 | 3 | 1 |
| Pseudomonas | stutzeri | 477 | 1 | 7 | 1 |
| Neisseria | subflava | 476 | 1 | 1 | 1 |
| Bifidobacterium | subtile | 890 | 1 | 2 | 1 |
| Bacillus | subtilis | 468 | 1 | 7 | 1 |
| Alloprevotella | tannerae | 466 | 1 | 1 | 2 |
| Acidovorax | temperans | 216 | 1 | 1 | 1 |
| Porphyrobacter | tepidarius | 7 | 1 | 1 | 1 |
| Comamonas | testosteroni | 858 | 1 | 4 | 1 |
| Anaerococcus | tetradius | 788 | 1 | 1 | 1 |
| Schlegelella | thermodepolymerans | 24 | 1 | 3 | 1 |
| Anaerolinea | thermophila | 995 | 1 | 1 | 2 |
| Streptococcus | thermophilus | 152 | 1 | 1 | 1 |
| Brochothrix | thermosphacta | 241 | 1 | 1 | 1 |
| Mogibacterium | timidum | 42 | 1 | 2 | 1 |
| Actinomyces | timonensis | 179 | 1 | 1 | 2 |
| Erysipelothrix | tonsillarum | 484 | 1 | 1 | 1 |
| Mycobacterium | tuberculosis | 822 | 1 | 8 | 1 |
| Corynebacterium | tuberculostearicum | 77 | 1 | 7 | 1 |
| Agrobacterium | tumefaciens | 485 | 1 | 6 | 1 |
| Corynebacterium | tuscaniense | 184 | 1 | 1 | 1 |
| Porphyromonas | uenonis | 785 | 1 | 2 | 2 |
| Olsenella | uli | 38 | 1 | 2 | 1 |
| Lactobacillus | ultunensis | 461 | 1 | 1 | 2 |
| Lachnoanaerobaculum | umeaense | 107 | 1 | 1 | 1 |
| Corynebacterium | urealyticum | 853 | 1 | 4 | 1 |
| Campylobacter | ureolyticus | 842 | 1 | 2 | 1 |
| Atopobium | vaginae | 814 | 1 | 2 | 1 |
| Lactobacillus | vaginalis | 51 | 1 | 1 | 1 |
| Gardnerella | vaginalis | 829 | 1 | 8 | 1 |
| Cardiobacterium | valvarum | 540 | 1 | 1 | 1 |
| Prevotella | veroralis | 572 | 1 | 3 | 3 |
| Mogibacterium | vescum | 8 | 1 | 0 | 1 |
| Streptococcus | vestibularis | 21 | 1 | 2 | 1 |
| Bosea | vestrisii | 636 | 1 | 1 | 1 |
| Treponema | vincentii | 29 | 1 | 2 | 1 |
| Aerococcus | viridans | 312 | 1 | 1 | 1 |
| Actinomyces | viscosus | 688 | 1 | 1 | 1 |
| Leptotrichia | wadei | 222 | 1 | 2 | 2 |
| Staphylococcus | warneri | 76 | 1 | 5 | 1 |
| Neisseria | weaveri | 92 | 1 | 2 | 1 |
| Scardovia | wiggsiae | 195 | 1 | 1 | 2 |
| Achromobacter | xylosoxidans | 343 | 1 | 5 | 1 |
| Paracoccus | yeei | 104 | 1 | 1 | 1 |
| Bacteroides | zoogleoformans | 465 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-9] | [Eubacterium] brachy | 557 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-1] | [Eubacterium] infirmum | 105 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-6] | [Eubacterium] minutum | 673 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-6] | [Eubacterium] nodatum | 694 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-5] | [Eubacterium] saphenum | 759 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-1] | [Eubacterium] sulci | 467 | 1 | 1 | 1 |
| Peptostreptococcaceae [XI][G-7] | [Eubacterium] yurii subsp. schtitka | 106 | 1 | 0 | 1 |
| Peptostreptococcaceae [XI][G-7] | [Eubacterium] yurii subsps. yurii & margaretiae | 377 | 1 | 1 | 2 |
