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Post subject: Genome Annotation Update - Streptococcus sp. oral taxon 070 F0441
 Posted: Feb 23, 2016 - 07:33 PM
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Joined: Dec 31, 1969
Posts: 16777215
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Automatic annotation for the genome - Streptococcus sp. oral taxon 070 F0441 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation
Summary of the annotation:
Full Name: Streptococcus sp. oral taxon 070 F0441
SEQ_ID: SEQF1888
Total contigs received: 11
Total bps received: 1981149
Average GC%: 41.15 (of total bps received)
Longest contig: 868526 bps
Shortest contig: 5593 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 0
Contigs 501 - 1000 bps: 0
Contigs 1001 - 1500 bps: 0
Contigs > 1500 bps: 11
Total ORFs*: 1944
Total BLASTP hits against NCBI nr: 1937
NCBI nr protein database dated: 2014-12-02
Total BLASTP hits against SwissProt: 1396
SwissProt protein database dated: 2014-12-01
ORFs with KEGG hits: 519
ORFs with GO hits: 178
* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)
Please address your questions to homd_curator@homd.org
~The HOMD Team~ |
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