HOMD :: Human Oral Microbiome Database

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Page: HP1

16S rRNA Refseq V15.23 Genomic RefSeq V10.1

HOMD Genomes

Navigate genomes by Phylum:

Navigate genomes by alphabet:
A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 2109 genomes

genomes: Options [+]
In: Matching
	Sequencing Status: All Complete High Coverage Survey
	Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal

No. of genomes starting with T: 54

Taxon ID*

Genus *

Species *

Strain/Culture
Collection *

SEQ ID *

No. of
contigs
& plasmids *

Combined
length (bp) *

GC
(%)

Genome Info and Tools

Available Annotations

HMT-613

Tannerella

forsythia

92A2 not ATCC 43037, FDC 338

SEQF1072

3,405,521

47.0

HOMD

Tannerella

forsythia

ATCC 43037, FDC 338

SEQF2738

141

3,281,748

47.1

HOMD

Tannerella

sp. HMT 286

isolate Cell 2

SEQF2635

501

3,038,315

56.2

HOMD

Tannerella

sp. HMT 286

isolate Cell 8/11

SEQF2638

1,618

2,665,364

54.9

HOMD

Tannerella

sp. HMT 286

isolate Cell 1/3

SEQF2634

1,263

2,785,640

55.3

HOMD

Tannerella

sp. HMT 286

W11666

SEQF3068

3,013,600

56.4

HOMD

Tannerella

sp. HMT 286

isolate Cell 6/7/9

SEQF2637

1,291

3,476,954

55.2

HOMD

Tannerella

sp. HMT 286

W11667

SEQF2807

2,973,544

56.5

HOMD

Tannerella

sp. HMT 286

isolate Cell 5

SEQF2636

742

3,214,909

55.9

HOMD

Tannerella

sp. HMT 808

SAG 103, Cell103

SEQF3104

608

2,698,296

57.2

HOMD

Tannerella

sp. HMT 808

SAG 110, Cell110

SEQF3106

673

2,697,694

57.2

HOMD

Tannerella

sp. HMT 808

SAG 108, Cell108

SEQF3105

529

2,776,130

57.5

HOMD

TM7

phylum sp. oral taxon 349

PM007

SEQF3678

1,021,750

46.8

HOMD

Treponema

denticola

SP33/F0465

SEQF1876

2,933,485

38.1

HOMD

Treponema

denticola

ATCC 33520

SEQF1865

2,886,890

38.2

HOMD

Treponema

denticola

ASLM/F0460

SEQF1872

2,768,236

38.4

HOMD

Treponema

denticola

H1-T/F0456

SEQF1868

2,929,700

38.1

HOMD

Treponema

denticola

SP32/F0464

SEQF1875

2,990,277

38.4

HOMD

Treponema

denticola

ATCC 35404

SEQF1864

2,771,508

38.4

HOMD

Treponema

denticola

US-Trep/F0459

SEQF1871

2,765,731

38.3

HOMD

Treponema

denticola

ATCC 33521

SEQF1878

2,762,110

38.3

HOMD

Treponema

denticola

SP37/F0455

SEQF1867

2,823,766

38.3

HOMD

Treponema

denticola

SP23/F0463

SEQF1874

2,825,999

38.0

HOMD

Treponema

denticola

ATCC 35405, DSM 14222

SEQF1061

2,843,201

37.9

HOMD

Treponema

denticola

F0402

SEQF1679

2,742,634

38.0

HOMD

Treponema

denticola

MYR-T/F0458

SEQF1870

2,935,848

38.1

HOMD

Treponema

denticola

SP44/F0466

SEQF1877

2,824,736

38.1

HOMD

Treponema

denticola

OTK/F0454

SEQF1866

2,857,526

37.9

HOMD

Treponema

denticola

AL-2/F0461

SEQF1873

2,843,090

38.2

HOMD

Treponema

denticola

Marseille-5-CSURP7640

SEQF3549

2,795,521

38.1

HOMD

Treponema

denticola

H-22/F0457

SEQF1869

2,757,856

38.2

HOMD

Treponema

lecithinolyticum

ATCC 700332

SEQF2462

2,340,885

43.8

HOMD

Treponema

maltophilum

ATCC 51939

SEQF1941

2,530,388

48.0

HOMD

Treponema

medium

ATCC 700293

SEQF1940

2,727,508

44.5

HOMD

Treponema

pallidum

subsp. pallidum str. Chicago

SEQF2182

1,139,281

52.8

HOMD

Treponema

pallidum

Dallas1

SEQF1419

1,139,971

52.8

HOMD

Treponema

pallidum

Fribourg-Blanc

SEQF2545

1,140,481

52.8

HOMD

Treponema

pallidum

subsp. pertenue str. SamoaD

SEQF1350

1,139,330

52.8

HOMD

Treponema

pallidum

SS14

SEQF1499

1,139,457

52.8

HOMD

Treponema

pallidum

subsp. pertenue str. CDC2

SEQF1328

1,139,744

52.8

HOMD

Treponema

pallidum

subsp. pallidum str. Mexico A

SEQF2429

1,140,038

52.8

HOMD

Treponema

pallidum

subsp. pertenue Gauthier

SEQF1326

1,139,417

52.8

HOMD

Treponema

pallidum

str. Nichols

SEQF1062

1,138,011

52.8

HOMD

Treponema

pectinovorum

Marseille-2-CSURP6642

SEQF3165

119

2,222,979

36.9

HOMD

Treponema

pectinovorum

Marseille-1-CSURP6641

SEQF3168

2,246,732

36.8

HOMD

Treponema

pectinovorum

ATCC 700769

SEQF3158

2,319,274

36.9

HOMD

Treponema

pectinovorum

Marseille-3-CSURP7641

SEQF3167

2,224,027

37.1

HOMD

Treponema

pectinovorum

Marseille-4-CSURP7639

SEQF3166

2,140,854

37.0

HOMD

Treponema

putidum

OMZ 758, ATCC 700334

SEQF2771

2,800,562

37.3

HOMD

Treponema

socranskii

ATCC 35535

SEQF1942

2,742,149

48.5

HOMD

Treponema

socranskii

ATCC 35536

SEQF2757

2,804,628

49.4

HOMD

Treponema

vincentii

F0403/N9

SEQF1947

2,693,493

45.8

HOMD

Treponema

vincentii

ATCC 35580

SEQF1610

2,514,590

45.7

HOMD

Turicella

otitidis

ATCC 51513

SEQF2407

2,118,285

71.8

HOMD

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Data last updated on :2022-02-10 10:34:28

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