HOMD :: Human Oral Microbiome Database

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Page: HP1

16S rRNA Refseq V15.23 Genomic RefSeq V10.1

HOMD Genomes

Navigate genomes by Phylum:

Navigate genomes by alphabet:
A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 2109 genomes

genomes: Options [+]
In: Matching
	Sequencing Status: All Complete High Coverage Survey
	Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal

No. of genomes starting with L: 186

Taxon ID*

Genus *

Species *

Strain/Culture
Collection *

SEQ ID *

No. of
contigs
& plasmids *

Combined
length (bp) *

GC
(%)

Genome Info and Tools

Available Annotations

HMT-082

Lachnoanaerobaculum

orale

F0431

SEQF1881

2,945,844

37.8

HOMD

Lachnoanaerobaculum

saburreum

F0468

SEQF2761

143

3,074,086

36.4

HOMD

Lachnoanaerobaculum

saburreum

DSM 3986

SEQF2760

3,082,404

38.8

HOMD

Lachnoanaerobaculum

sp. HMT 083

MSX33

SEQF2917

2,871,049

36.2

HOMD

Lachnoanaerobaculum

umeaense

F0167

SEQF1478

3,288,100

35.9

HOMD

Lachnospiraceae

bacterium HMT 096

F0428

SEQF3057

2,232,415

39.7

HOMD

Lachnospiraceae

bacterium oral taxon 096

F0428

SEQF3712

2,241,976

39.7

HOMD

Lachnospiraceae [G-8]

bacterium HMT500

W11650

SEQF3066

3,201,383

45.3

HOMD

Lactobacillus

acidophilus

La-14

SEQF2540

1,991,579

34.7

HOMD

Lactobacillus

acidophilus

CIP 76.13

SEQF2600

1,951,821

34.7

HOMD

Lactobacillus

acidophilus

NCFM

SEQF1073

1,993,560

34.7

HOMD

Lactobacillus

acidophilus

30SC

SEQF2108

2,097,766

38.1

HOMD

Lactobacillus

acidophilus

DSM 20242

SEQF2552

2,047,860

34.7

HOMD

Lactobacillus

acidophilus

DSM 9126

SEQF2602

1,991,758

34.7

HOMD

Lactobacillus

acidophilus

ATCC 4796

SEQF1761

2,020,500

35.3

HOMD

Lactobacillus

acidophilus

CIRM-BIA 442

SEQF2551

1,986,992

34.7

HOMD

Lactobacillus

acidophilus

CIRM-BIA 445

SEQF2601

2,002,008

34.7

HOMD

Lactobacillus

brevis

ATCC 27305

SEQF1638

106

3,144,656

41.3

HOMD

Lactobacillus

brevis

KB290

SEQF2565

2,587,877

45.6

HOMD

Lactobacillus

brevis

ATCC 367

SEQF1252

2,340,228

46.1

HOMD

Lactobacillus

buchneri

NRRL B-30929

SEQF2428

2,588,309

44.2

HOMD

Lactobacillus

buchneri

CD034

SEQF2427

2,563,168

44.2

HOMD

Lactobacillus

buchneri

ATCC 11577

SEQF2418

104

2,906,028

40.5

HOMD

Lactobacillus

casei

BD-II

SEQF2109

3,127,288

46.3

HOMD

Lactobacillus

casei

Lc-10

SEQF2494

2,951,397

46.4

HOMD

Lactobacillus

casei

LOCK919

SEQF2566

3,143,369

46.2

HOMD

Lactobacillus

casei

BL23

SEQF1246

3,079,196

46.3

HOMD

Lactobacillus

casei

CRF28

SEQF2493

3,036,548

46.3

HOMD

Lactobacillus

casei

M36

SEQF2496

3,152,126

46.3

HOMD

Lactobacillus

casei

LC2W

SEQF2110

3,077,434

46.3

HOMD

Lactobacillus

casei

Lpc-37

SEQF2495

150

3,075,253

46.3

HOMD

Lactobacillus

casei

str. Zhang

SEQF1493

2,898,456

46.4

HOMD

Lactobacillus

coleohominis

101-4-CHN

SEQF1922

1,725,829

42.0

HOMD

Lactobacillus

crispatus

ST1

SEQF1930

2,043,161

36.9

HOMD

Lactobacillus

crispatus

FB049-03

SEQF2421

2,459,384

39.9

HOMD

Lactobacillus

crispatus

JV-V01

SEQF1368

2,221,719

41.3

HOMD

Lactobacillus

crispatus

214-1

SEQF2084

187

2,068,805

36.9

HOMD

Lactobacillus

crispatus

FB077-07

SEQF2420

2,699,381

40.8

HOMD

Lactobacillus

fermentum

MTCC 8711

SEQF2605

116

2,566,297

49.7

HOMD

Lactobacillus

fermentum

ATCC 14931

SEQF1766

1,867,005

54.6

HOMD

Lactobacillus

fermentum

IFO 3956

SEQF1533

2,098,685

51.5

HOMD

Lactobacillus

fermentum

F-6

SEQF2541

2,064,620

51.7

HOMD

Lactobacillus

fermentum

CECT 5716

SEQF1964

2,100,449

51.6

HOMD

Lactobacillus

gasseri

202-4

SEQF1767

1,820,250

34.9

HOMD

Lactobacillus

gasseri

ATCC 33323

SEQF1255

1,894,360

35.3

HOMD

Lactobacillus

gasseri

2016

SEQF2557

1,879,515

35.3

HOMD

Lactobacillus

gasseri

CECT 5714

SEQF2497

1,907,790

35.0

HOMD

Lactobacillus

gasseri

JV-V03

SEQF1769

2,011,855

34.6

HOMD

Lactobacillus

gasseri

224-1

SEQF1768

2,005,522

35.0

HOMD

Lactobacillus

gasseri

SEQF2558

1,994,163

34.8

HOMD

Lactobacillus

iners

LactinV 03V1-b

SEQF2092

1,303,958

32.7

HOMD

Lactobacillus

iners

SPIN 1401G

SEQF2099

1,281,027

32.5

HOMD

Lactobacillus

iners

LEAF 2052A-d

SEQF2095

1,322,320

32.7

HOMD

Lactobacillus

iners

DSM 13335

SEQF1770

1,277,649

33.0

HOMD

Lactobacillus

iners

UPII 60-B

SEQF2102

1,323,615

32.7

HOMD

Lactobacillus

iners

LactinV 01V1-a

SEQF2091

1,294,173

32.7

HOMD

Lactobacillus

iners

LEAF 3008A-a

SEQF2098

1,273,041

32.5

HOMD

Lactobacillus

iners

LactinV 11V1-d

SEQF2094

1,310,250

32.6

HOMD

Lactobacillus

iners

UPII 143-D

SEQF2101

1,257,583

32.6

HOMD

Lactobacillus

iners

ATCC 55195

SEQF2090

1,238,993

33.6

HOMD

Lactobacillus

iners

LEAF 2062A-h1

SEQF2097

1,303,868

32.7

HOMD

Lactobacillus

iners

LactinV 09V1-c

SEQF2093

1,312,334

32.7

HOMD

Lactobacillus

iners

SPIN 2503V10-D

SEQF2100

1,283,897

32.6

HOMD

Lactobacillus

iners

LEAF 2053A-b

SEQF2096

1,368,717

32.4

HOMD

Lactobacillus

jensenii

1153

SEQF1649

1,746,219

34.9

HOMD

Lactobacillus

jensenii

JV-V16

SEQF1104

1,604,632

34.6

HOMD

Lactobacillus

jensenii

269-3

SEQF1773

1,688,275

34.4

HOMD

Lactobacillus

johnsonii

N6.2

SEQF2611

1,887,251

34.5

HOMD

Lactobacillus

johnsonii

NCC 533

SEQF1026

1,992,676

34.6

HOMD

Lactobacillus

johnsonii

FI9785

SEQF1716

1,785,116

34.4

HOMD

Lactobacillus

johnsonii

DPC 6026

SEQF2111

1,966,342

34.8

HOMD

Lactobacillus

johnsonii

ATCC 33200

SEQF1776

1,780,499

34.7

HOMD

Lactobacillus

johnsonii

pf01

SEQF2103

1,973,006

34.7

HOMD

Lactobacillus

kisonensis

F0435

SEQF1861

2,987,059

42.0

HOMD

Lactobacillus

oris

F0423

SEQF1856

2,174,937

49.7

HOMD

Lactobacillus

oris

PB013-T2-3

SEQF1910

2,115,990

49.8

HOMD

Lactobacillus

panis

DSM 6035

SEQF2809

150

2,006,512

48.1

HOMD

Lactobacillus

paracasei

8700:2

SEQF1262

3,025,352

46.3

HOMD

Lactobacillus

paracasei

ATCC 25302

SEQF1777

2,991,737

48.4

HOMD

Lactobacillus

paracasei

Lpp120

SEQF2528

201

2,801,291

46.5

HOMD

Lactobacillus

paracasei

ATCC 334

SEQF1254

2,924,325

46.6

HOMD

Lactobacillus

paracasei

Lpp230

SEQF2527

144

2,892,319

46.3

HOMD

Lactobacillus

paracasei

Lpl7

SEQF2526

3,089,104

46.3

HOMD

Lactobacillus

parafarraginis

F0439

SEQF1862

165

2,854,910

45.7

HOMD

Lactobacillus

pentosus

KCA1

SEQF2419

3,426,323

46.5

HOMD

Lactobacillus

plantarum

UCMA 3037

SEQF2498

3,108,278

44.6

HOMD

Lactobacillus

plantarum

subsp. plantarum ATCC 14917

SEQF1984

3,212,261

44.7

HOMD

Lactobacillus

plantarum

IPLA88

SEQF2525

208

3,254,055

44.4

HOMD

Lactobacillus

plantarum

subsp. plantarum P-8

SEQF2543

3,246,630

44.6

HOMD

Lactobacillus

plantarum

JDM1

SEQF2112

3,197,759

44.7

HOMD

Lactobacillus

plantarum

SEQF2542

3,361,015

44.4

HOMD

Lactobacillus

plantarum

subsp. plantarum NC8

SEQF2104

3,207,224

44.6

HOMD

Lactobacillus

plantarum

WCFS1

SEQF1965

3,348,624

44.4

HOMD

Lactobacillus

plantarum

ZJ316

SEQF2441

3,299,755

44.5

HOMD

Lactobacillus

plantarum

subsp. plantarum ST-III

SEQF2113

3,307,936

44.5

HOMD

Lactobacillus

rapi

DSM 19907 = JCM 15042

SEQF2810

2,854,844

43.0

HOMD

Lactobacillus

reuteri clade 818

CF48-3A

SEQF1778

2,107,903

40.9

HOMD

Lactobacillus

reuteri clade 818

JCM 1112, F275

SEQF1121

2,039,414

38.9

HOMD

Lactobacillus

reuteri clade 818

MM4-1A

SEQF1780

2,067,914

38.9

HOMD

Lactobacillus

reuteri clade 818

SD2112

SEQF1369

2,316,838

39.0

HOMD

Lactobacillus

reuteri clade 818

MM2-3

SEQF1779

2,015,721

40.9

HOMD

Lactobacillus

reuteri clade 818

100-23

SEQF1120

2,305,557

38.7

HOMD

Lactobacillus

reuteri clade 818

F275, JCM 1112, DSM 20016

SEQF1095

1,999,618

38.9

HOMD

Lactobacillus

reuteri clade 818

I5007

SEQF2544

2,093,275

38.9

HOMD

Lactobacillus

reuteri clade 818

TD1

SEQF2567

2,145,445

38.8

HOMD

Lactobacillus

rhamnosus

MTCC 5462

SEQF2118

2,543

2,524,513

46.9

HOMD

Lactobacillus

rhamnosus

SEQF1717

3,010,111

46.7

HOMD

Lactobacillus

rhamnosus

LMS2-1

SEQF1781

3,159,402

47.4

HOMD

Lactobacillus

rhamnosus

ATCC 21052

SEQF2117

2,877,033

46.8

HOMD

Lactobacillus

rhamnosus

LOCK908

SEQF2569

2,990,900

46.8

HOMD

Lactobacillus

rhamnosus

LRHMDP3

SEQF2500

2,911,934

46.6

HOMD

Lactobacillus

rhamnosus

ATCC 8530

SEQF2114

2,960,339

46.8

HOMD

Lactobacillus

rhamnosus

LOCK900

SEQF2568

2,883,376

46.8

HOMD

Lactobacillus

rhamnosus

LRHMDP2

SEQF2499

2,911,110

46.6

HOMD

Lactobacillus

rhamnosus

HN001

SEQF1257

2,914,408

46.7

HOMD

Lactobacillus

rhamnosus

R0011

SEQF2119

2,900,620

46.7

HOMD

Lactobacillus

rhamnosus

Lc 705

SEQF1718

3,033,106

46.7

HOMD

Lactobacillus

salivarius

GJ-24

SEQF2121

1,995,968

33.0

HOMD

Lactobacillus

salivarius

CECT 5713

SEQF1966

2,136,138

33.1

HOMD

Lactobacillus

salivarius

UCC118

SEQF1259

2,133,977

33.0

HOMD

Lactobacillus

salivarius

ACS-116-V-Col5a

SEQF2120

154

2,044,602

32.7

HOMD

Lactobacillus

salivarius

SMXD51

SEQF2328

1,967,690

32.9

HOMD

Lactobacillus

salivarius

cp400

SEQF2628

2,156,840

33.1

HOMD

Lactobacillus

salivarius

ATCC 11741

SEQF1782

2,017,251

33.3

HOMD

Lactobacillus

salivarius

NIAS840

SEQF2122

2,046,557

33.0

HOMD

Lactobacillus

ultunensis

dsm_16047

SEQF2852

2,248,406

38.3

HOMD

Lactobacillus

vaginalis

ATCC 49540

SEQF1783

112

1,877,332

42.9

HOMD

Lactococcus

lactis

MG1363

SEQF1500

2,529,478

35.8

HOMD

Lactococcus

lactis

TIFN7

SEQF2559

370

2,634,086

35.6

HOMD

Lactococcus

lactis

NZ9000

SEQF2151

2,530,294

35.7

HOMD

Lactococcus

lactis

UC509.9

SEQF2570

2,457,347

35.7

HOMD

Lactococcus

lactis

SK11

SEQF1501

2,598,348

35.8

HOMD

Lactococcus

lactis

IO-1

SEQF2473

2,421,471

35.1

HOMD

Lactococcus

lactis

A76

SEQF2150

2,577,104

35.9

HOMD

Lactococcus

lactis

str. TIFN4

SEQF2561

182

2,550,393

35.1

HOMD

Lactococcus

lactis

IL1403

SEQF1482

2,365,589

35.3

HOMD

Lactococcus

lactis

CNCM I-1631

SEQF2374

131

2,511,332

34.9

HOMD

Lactococcus

lactis

KF147

SEQF1719

2,635,654

34.9

HOMD

Lactococcus

lactis

str. TIFN2

SEQF2560

143

2,505,069

35.1

HOMD

Lactococcus

lactis

CV56

SEQF2152

2,518,737

35.1

HOMD

Lautropia

mirabilis

ATCC 51599

SEQF1967

3,151,925

65.7

HOMD

Lawsonella

clevelandensis

x1698

SEQF2877

1,915,154

58.6

HOMD

Leptotrichia

buccalis

C-1013-b, DSM 1135, ATCC 14201, JCM 1296

SEQF1287

2,465,610

29.7

HOMD

Leptotrichia

goodfellowii

F0264

SEQF1600

208

2,287,284

31.5

HOMD

Leptotrichia

goodfellowii

DSM 19756

SEQF2629

2,281,162

31.6

HOMD

Leptotrichia

hofstadii

F0254

SEQF1601

2,456,453

30.9

HOMD

Leptotrichia

hofstadii

DSM 21651

SEQF2581

2,560,738

30.7

HOMD

Leptotrichia

hongkongensis

JMUB5056

SEQF3159

2,284,180

29.9

HOMD

Leptotrichia

shahii

DSM 19757

SEQF2501

2,144,606

29.5

HOMD

Leptotrichia

sp. HMT 212

W10393

SEQF2748

2,444,904

31.4

HOMD

Leptotrichia

sp. HMT 215

W9775

SEQF2444

2,308,492

31.5

HOMD

Leptotrichia

sp. HMT 223

F0708

SEQF3177

2,584,194

31.4

HOMD

Leptotrichia

sp. HMT 225

F0581

SEQF2452

174

2,400,083

29.7

HOMD

Leptotrichia

sp. HMT 417

F0703

SEQF3178

2,528,148

29.9

HOMD

Leptotrichia

sp. HMT 498

f0590

SEQF2920

2,152,181

29.6

HOMD

Leptotrichia

sp. HMT 847

F0260

SEQF2790

2,194,935

29.8

HOMD

Leptotrichia

sp. HMT 879

F0557

SEQF2353

2,415,750

29.9

HOMD

Leptotrichia

sp. oral taxon 218

F0707

SEQF3703

2,172,496

29.0

HOMD

Leptotrichia

sp. oral taxon 221

F0705

SEQF3704

2,076,334

29.2

HOMD

Leptotrichia

wadei

DSM 19758

SEQF2502

2,316,529

29.3

HOMD

Leptotrichia

wadei

F0279

SEQF1618

2,353,455

29.4

HOMD

Listeria

monocytogenes

08-5578

SEQF1053

3,109,678

37.9

HOMD

Listeria

monocytogenes

FSL J2-071

SEQF1543

2,853,713

38.1

HOMD

Listeria

monocytogenes

J0161

SEQF1551

3,000,464

37.9

HOMD

Listeria

monocytogenes

SEQF2154

2,976,163

38.2

HOMD

Listeria

monocytogenes

1/2a F6854

SEQF1050

133

2,950,285

37.9

HOMD

Listeria

monocytogenes

FSL R2-503

SEQF1546

2,991,493

37.8

HOMD

Listeria

monocytogenes

08-5923

SEQF1720

2,999,054

38.0

HOMD

Listeria

monocytogenes

FSL J1-194

SEQF1479

2,989,818

37.8

HOMD

Listeria

monocytogenes

HPB2262

SEQF1549

2,991,120

37.8

HOMD

Listeria

monocytogenes

EGD-e

SEQF2153

2,944,528

38.0

HOMD

Listeria

monocytogenes

4b F2365

SEQF1051

2,905,187

38.0

HOMD

Listeria

monocytogenes

serotype 4a str. L99

SEQF2155

2,979,198

38.2

HOMD

Listeria

monocytogenes

FSL N3-165

SEQF1545

2,884,080

37.8

HOMD

Listeria

monocytogenes

HCC23

SEQF1574

2,976,212

38.2

HOMD

Listeria

monocytogenes

F6900

SEQF1459

2,968,620

37.8

HOMD

Listeria

monocytogenes

Finland 1988

SEQF1548

2,874,431

38.1

HOMD

Listeria

monocytogenes

FSL F2-208

SEQF2123

3,223,176

43.9

HOMD

Listeria

monocytogenes

4b H7858

SEQF1052

181

2,972,254

38.0

HOMD

Listeria

monocytogenes

FSL N1-017

SEQF1544

3,142,060

37.8

HOMD

Listeria

monocytogenes

J2818

SEQF1552

2,973,040

37.8

HOMD

Listeria

monocytogenes

10403S

SEQF1456

2,903,106

38.0

HOMD

Listeria

monocytogenes

FSL R2-561

SEQF1547

2,973,801

38.0

HOMD

Listeria

monocytogenes

serotype 4b str. CLIP 80459

SEQF1721

2,912,690

38.1

HOMD

Lysinibacillus

fusiformis

ZC1

SEQF1920

113

4,649,417

37.3

HOMD

Lysinibacillus

fusiformis

ZB2

SEQF2422

4,549,529

37.3

HOMD

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Data last updated on :2022-02-10 10:34:28

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