HOMD :: Human Oral Microbiome Database

Home
Taxon Description
16S rRNA RefSeq
Genomes
Proteomes
- View genomic tree based on conserved proteins
- Download All Protein Sequences Annotated from Genomes
HOMD Tools
Download
HOMD Information
Page: HP1

16S rRNA Refseq Genomic RefSeq

HOMD Genomes

Navigate genomes by Phylum:

Navigate genomes by alphabet:
A|B|C|D|E|F|G|H|I|J|K|L|M|N|O|P|Q|R|S|T|U|V|W|X|Y|Z|All Entries: 2109 genomes

genomes: Options [+]
In: Matching
	Sequencing Status: All Complete High Coverage Survey
	Annotation: All HOMD with StaticHOMD onlyStatic onlyNon-oral/nasal

No. of genomes starting with A: 187

Taxon ID*

Genus *

Species *

Strain/Culture
Collection *

SEQ ID *

No. of
contigs
& plasmids *

Combined
length (bp) *

GC
(%)

Genome Info and Tools

Available Annotations

HMT-389

Abiotrophia

defectiva

ATCC 49176

SEQF1595

2,043,439

47.0

HOMD

Absconditabacteria (SR1) [G-1]

bacterium HMT 874

MGEHA

SEQF2626

1,109,712

35.7

HOMD

Absconditabacteria (SR1) [G-3]

bacterium HMT 991

RAAC1_SR1_1

SEQF3107

1,177,760

31.1

HOMD

Achromobacter

xylosoxidans

C54

SEQF2030

262

6,514,720

68.5

HOMD

Achromobacter

xylosoxidans

AXX-A

SEQF2029

6,860,805

68.9

HOMD

Achromobacter

xylosoxidans

NBRC 15126 = ATCC 27061

SEQF2610

6,683,584

67.5

HOMD

Achromobacter

xylosoxidans

SEQF1926

7,359,146

65.8

HOMD

Achromobacter

xylosoxidans

NH44784-1996

SEQF2546

6,916,670

67.5

HOMD

Acidipropionibacterium

acidifaciens

DSM 21887

SEQF2583

3,043,901

70.6

HOMD

Acidipropionibacterium

acidifaciens

F0233

SEQF1851

334

3,017,605

70.4

HOMD

Acidovorax

caeni

R-24608

SEQF3073

115

4,152,335

65.6

HOMD

Acidovorax

ebreus

tpsy

SEQF2863

3,796,573

66.8

HOMD

Acidovorax

temperans

ky4

SEQF2893

141

4,475,784

62.9

HOMD

Acinetobacter

baumannii

ACICU

SEQF1398

3,996,761

38.9

HOMD

Acinetobacter

baumannii

AB307-0294

SEQF1622

3,760,981

39.0

HOMD

Acinetobacter

baumannii

ATCC 17978

SEQF1384

4,001,457

38.9

HOMD

Acinetobacter

baumannii

MDR-ZJ06

SEQF1486

4,022,275

39.1

HOMD

Acinetobacter

baumannii

AYE

SEQF1164

4,048,735

39.3

HOMD

Acinetobacter

baumannii

AB0057

SEQF1485

4,063,879

39.2

HOMD

Acinetobacter

baumannii

SDF

SEQF1161

3,477,996

39.1

HOMD

Acinetobacter

johnsonii

xbb1

SEQF2916

4,081,329

41.1

HOMD

Acinetobacter

junii

SEQF2875

3,378,307

38.6

HOMD

Acinetobacter

lwoffii

niph_512

SEQF2884

3,384,618

43.1

HOMD

Acinetobacter

radioresistens

wc_a_157

SEQF2864

3,209,605

41.7

HOMD

Actinomyces

cardiffensis

F0333

SEQF1667

2,214,851

62.0

HOMD

Actinomyces

dentalis

DSM 19115

SEQF2573

3,531,393

73.1

HOMD

Actinomyces

georgiae

F0490

SEQF1902

306

2,477,360

69.8

HOMD

Actinomyces

georgiae

DSM 6843

SEQF2574

2,498,023

69.9

HOMD

Actinomyces

gerencseriae

DSM 6844

SEQF2575

3,420,019

70.8

HOMD

Actinomyces

graevenitzii

F0530

SEQF2450

2,090,952

57.9

HOMD

Actinomyces

graevenitzii

C83

SEQF2031

2,205,725

58.0

HOMD

Actinomyces

israelii

DSM 43320

SEQF2705

102

4,025,772

71.5

HOMD

Actinomyces

johnsonii

F0330

SEQF1668

3,459,374

67.8

HOMD

Actinomyces

johnsonii

F0542

SEQF2449

266

3,327,711

67.5

HOMD

Actinomyces

johnsonii

F0510

SEQF2317

324

3,383,063

67.5

HOMD

Actinomyces

lingnae [Not Validly Published]

F0379

SEQF1948

1,901,306

56.0

HOMD

Actinomyces

massiliensis

F0489

SEQF1903

233

3,416,440

67.7

HOMD

Actinomyces

massiliensis

4401292

SEQF2385

3,371,034

68.0

HOMD

Actinomyces

meyeri

W712

SEQF2739

2,049,088

65.5

HOMD

Actinomyces

naeslundii

str. Howell 279

SEQF2386

243

3,114,341

67.9

HOMD

Actinomyces

oricola

R5292

SEQF3145

2,930,686

68.7

HOMD

Actinomyces

oris

K20

SEQF2431

771

2,872,429

67.8

HOMD

Actinomyces

oris

T14V

SEQF2806

3,042,917

68.5

HOMD

Actinomyces

radicidentis

CCUG 36733

SEQF2781

3,051,613

72.6

HOMD

Actinomyces

sp. HMT 170

F0386

SEQF1849

3,135,144

67.8

HOMD

Actinomyces

sp. HMT 171

F0337

SEQF3095

3,097,489

68.1

HOMD

Actinomyces

sp. HMT 171

F0337

SEQF1693

280

3,006,255

68.1

HOMD

Actinomyces

sp. HMT 172

F0311

SEQF2430

215

2,469,990

66.6

HOMD

Actinomyces

sp. HMT 175

F0384

SEQF1848

3,133,330

68.7

HOMD

Actinomyces

sp. HMT 178

F0338

SEQF1666

2,817,106

71.5

HOMD

Actinomyces

sp. HMT 180

F0310

SEQF1647

2,372,658

66.7

HOMD

Actinomyces

sp. HMT 414

F0588

SEQF2745

3,836,419

71.9

HOMD

Actinomyces

sp. HMT 448

F0400

SEQF1701

2,828,172

70.0

HOMD

Actinomyces

sp. HMT 877

F0543

SEQF2313

273

2,713,514

70.8

HOMD

Actinomyces

sp. HMT 897

F0631

SEQF3062

3,249,416

71.6

HOMD

Actinomyces

sp. oral taxon 169

F0496

SEQF3180

3,040,651

68.5

HOMD

Actinomyces

timonensis

DSM 23838

SEQF2594

2,932,944

71.4

HOMD

Actinomyces

viscosus

C505

SEQF2689

3,134,496

68.7

HOMD

Aerococcus

viridans

fdaargos_249

SEQF2883

2,003,760

39.6

HOMD

Afipia

broomeae

ATCC 49717

SEQF2411

5,261,968

61.4

HOMD

Aggregatibacter

actinomycetemcomitans

ANH9381

SEQF1953

2,136,808

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. SA3096

SEQF2836

127

2,093,980

44.8

HOMD

Aggregatibacter

actinomycetemcomitans

HK_974

SEQF3504

111

2,114,183

44.0

HOMD

Aggregatibacter

actinomycetemcomitans

serotype b str. SCC1398

SEQF2034

2,042,853

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

310a

SEQF3479

2,326,465

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_728

SEQF3511

2,046,220

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype b str. S23A

SEQF2437

2,170,434

45.5

HOMD

Aggregatibacter

actinomycetemcomitans

PN_687

SEQF3486

2,078,207

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

HK_973

SEQF3518

2,298,901

44.1

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. SA2149

SEQF2825

114

1,999,823

44.7

HOMD

Aggregatibacter

actinomycetemcomitans

PN_796

SEQF3493

2,094,863

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

serotype d str. SA269

SEQF2832

511

2,100,821

44.9

HOMD

Aggregatibacter

actinomycetemcomitans

PN_439

SEQF3500

2,103,450

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

624

SEQF2839

2,367,908

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

HK_1710

SEQF3507

109

2,113,453

44.1

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. SC1083

SEQF2295

2,137,435

44.6

HOMD

Aggregatibacter

actinomycetemcomitans

HK_961

SEQF3482

2,172,405

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

PN_567

SEQF3514

2,249,774

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

PN_684

SEQF3489

2,112,895

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype d str. SA508

SEQF2828

549

1,943,012

45.5

HOMD

Aggregatibacter

actinomycetemcomitans

PN_563

SEQF3496

2,243,743

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

Y4, ATCC 43718

SEQF1894

2,186,501

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

SC383s

SEQF2835

2,029,659

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

K_51

SEQF3503

112

2,180,793

44.1

HOMD

Aggregatibacter

actinomycetemcomitans

serotype b str. I23C

SEQF2033

2,112,113

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

310b

SEQF3478

2,325,391

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

NCTC_9710

SEQF3510

2,069,548

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype a str. A160

SEQF2436

118

2,256,834

44.6

HOMD

Aggregatibacter

actinomycetemcomitans

PN_773

SEQF3485

2,038,882

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

HK_907

SEQF3517

2,316,234

44.0

HOMD

Aggregatibacter

actinomycetemcomitans

NUM4039

SEQF2824

2,382,853

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_434

SEQF3492

2,062,382

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype d str. SA2200

SEQF2831

436

2,064,962

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

PN_435

SEQF3499

2,120,456

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

HK1651

SEQF1074

2,105,503

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

D17P-3

SEQF1955

123

2,284,348

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

VT1169

SEQF2838

2,129,092

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

PN_756

SEQF3506

2,068,069

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype f str. D18P1

SEQF2294

114

2,266,108

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

HK_1002

SEQF3481

2,217,012

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

PN_628

SEQF3513

2,030,108

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype c str. AAS4A

SEQF2439

2,126,064

46.8

HOMD

Aggregatibacter

actinomycetemcomitans

PN_740

SEQF3488

2,245,442

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

NCTC9709

SEQF3520

2,089,682

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. SA2876

SEQF2827

158

2,254,258

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_561

SEQF3495

2,237,318

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

D7S-1

SEQF1845

2,308,962

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

serotype d str. SA3733

SEQF2834

787

1,860,132

45.8

HOMD

Aggregatibacter

actinomycetemcomitans

PN_438

SEQF3502

2,062,693

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

serotype a str. H5P1

SEQF2032

102

2,200,508

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

KCOM 1299

SEQF3477

2,291,820

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

PN_686

SEQF3509

2,036,242

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

serotype c str. SCC2302

SEQF2297

2,034,590

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

SC1000

SEQF3484

2,099,973

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

PN_565

SEQF3516

2,043,562

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

RhAA1

SEQF2823

2,233,070

44.7

HOMD

Aggregatibacter

actinomycetemcomitans

PN_627

SEQF3491

2,107,804

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. ANH9776

SEQF2830

590

1,905,614

45.9

HOMD

Aggregatibacter

actinomycetemcomitans

PN_559

SEQF3498

2,247,465

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

D17P-2

SEQF1954

2,187,951

44.9

HOMD

Aggregatibacter

actinomycetemcomitans

IDH781

SEQF2837

2,291,252

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_436

SEQF3505

2,079,715

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype d str. I63B

SEQF2250

134

2,222,263

44.9

HOMD

Aggregatibacter

actinomycetemcomitans

PN_800

SEQF3480

2,032,621

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

PN_688

SEQF3512

2,246,979

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

serotype b str. SCC4092

SEQF2438

2,099,572

46.0

HOMD

Aggregatibacter

actinomycetemcomitans

PN_738

SEQF3487

2,134,503

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_696

SEQF3519

2,284,248

44.0

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. SC936

SEQF2826

2,164,700

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

PN_647

SEQF3494

2,101,177

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

D11S-1

SEQF1707

2,204,692

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

serotype d str. SA3033

SEQF2833

127

2,198,607

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_437

SEQF3501

2,248,516

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

DSM 8324

SEQF3475

2,085,887

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

PN_694

SEQF3508

2,039,051

44.5

HOMD

Aggregatibacter

actinomycetemcomitans

serotype e str. SCC393

SEQF2296

106

2,254,042

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

HK_929

SEQF3483

2,303,141

44.3

HOMD

Aggregatibacter

actinomycetemcomitans

PN_566

SEQF3515

2,041,829

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

PN_708

SEQF3490

2,109,962

44.4

HOMD

Aggregatibacter

actinomycetemcomitans

serotype f str. SC29R

SEQF2829

227

2,211,394

44.2

HOMD

Aggregatibacter

actinomycetemcomitans

PN_648

SEQF3497

2,065,846

44.5

HOMD

Aggregatibacter

aphrophilus

F0387

SEQF1675

2,262,693

42.4

HOMD

Aggregatibacter

aphrophilus

ATCC 33389

SEQF1956

2,267,213

42.2

HOMD

Aggregatibacter

aphrophilus

NJ8700

SEQF1221

2,313,035

42.2

HOMD

Aggregatibacter

paraphrophilus

W10433

SEQF2750

2,414,427

42.3

HOMD

Aggregatibacter

segnis

ATCC 33393

SEQF1957

2,012,010

43.0

HOMD

Aggregatibacter

sp. HMT 458

W10330

SEQF2445

2,016,624

43.2

HOMD

Aggregatibacter

sp. oral taxon 513

W11186

SEQF3707

1,939,696

42.7

HOMD

Agrobacterium

tumefaciens

SEQF2321

5,743,108

58.6

HOMD

Agrobacterium

tumefaciens

SEQF2035

5,465,705

59.5

HOMD

Agrobacterium

tumefaciens

str. Cherry 2E-2-2

SEQF2482

112

5,425,293

59.9

HOMD

Agrobacterium

tumefaciens

str. C58, ATCC 33970

SEQF1167

5,674,258

59.0

HOMD

Agrobacterium

tumefaciens

CCNWGS0286

SEQF2322

5,214,870

59.5

HOMD

Agrobacterium

tumefaciens

biovar II K84

SEQF1087

7,273,300

59.9

HOMD

Alloiococcus

otitis

ATCC 51267

SEQF2412

1,806,596

45.3

HOMD

Alloprevotella

rava

F0323

SEQF1671

2,593,873

45.6

HOMD

Alloprevotella

sp. HMT 473

F0040

SEQF1899

2,553,017

46.2

HOMD

Alloprevotella

tannerae

ATCC 51259

SEQF1597

2,585,719

46.6

HOMD

Alloscardovia

omnicolens

F0580

SEQF2451

1,791,870

46.7

HOMD

Alloscardovia

omnicolens

DSM 21503

SEQF2547

1,847,146

46.7

HOMD

Anaerococcus

lactolyticus

ATCC 51172

SEQF1982

251

2,206,675

35.8

HOMD

Anaerococcus

octavius

NCTC9810

SEQF3147

1,914,290

30.6

HOMD

Anaerococcus

octavius

UMB0119

SEQF3146

1,979,036

30.7

HOMD

Anaerococcus

prevotii

DSM 20548, PC1, ATCC 9321

SEQF1083

1,998,633

35.6

HOMD

Anaerococcus

prevotii

ACS-065-V-Col13

SEQF2036

1,697,099

33.0

HOMD

Anaerococcus

tetradius

ATCC 35098

SEQF1728

100

2,145,347

35.5

HOMD

Anaeroglobus

geminatus

F0357

SEQF1880

1,798,854

49.1

HOMD

Anaerolinea

thermophila

UNI-1

SEQF2715

3,532,378

53.9

HOMD

Anaerolineae [G-1]

bacterium HMT 439

w11661

SEQF2921

2,945,494

54.9

HOMD

Anaerolineae [G-1]

bacterium HMT 439

isolate Chl2

SEQF2641

113

1,160,015

53.9

HOMD

Anoxybacillus

flavithermus

dsm_2641t

SEQF2850

2,812,123

41.8

HOMD

Arachnia

propionica

F0231

SEQF3709

3,404,402

66.2

HOMD

Arachnia

propionica

F0714

SEQF3710

3,448,470

66.1

HOMD

Arachnia

rubra

DSMZ 100122

SEQF3708

3,316,958

64.2

HOMD

Arcanobacterium

haemolyticum

DSM 20595, CCM, ATCC 9345

SEQF1187

1,986,154

53.1

HOMD

Arsenicicoccus

bolidensis

F0371

SEQF2746

3,525,271

72.7

HOMD

Arthrospira

platensis

paraca

SEQF2856

268

6,501,886

44.3

HOMD

Atopobium

minutum

10063974

SEQF2483

1,706,966

49.0

HOMD

Atopobium

parvulum

DNF00906

SEQF2726

1,527,867

48.4

HOMD

Atopobium

parvulum

DSM 20469, IPP 1246, ATCC 33793

SEQF1084

1,543,805

45.7

HOMD

Atopobium

rimae

ATCC 49626, VPI D140H-11A

SEQF1003

1,626,291

49.3

HOMD

Atopobium

rimae

DSM 7090

SEQF2780

1,629,936

49.3

HOMD

Atopobium

sp. HMT 199

F0494

SEQF1949

1,665,560

52.0

HOMD

Atopobium

sp. HMT 810

F0209

SEQF2455

1,947,547

49.2

HOMD

Atopobium

sp. oral taxon 416

W9116

SEQF3706

3,004,013

55.7

HOMD

Atopobium

vaginae

DSM 15829

SEQF1729

1,430,526

42.7

HOMD

Atopobium

vaginae

PB189-T1-4

SEQF2037

1,449,613

48.7

HOMD

* Click to toggle the sorting order.

Data last updated on :2022-02-10 10:34:28

Hosted on Amazon AWS EC2

192.168.0.51