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eHOMD Genomic 16S rRNA Gene Tree Version 9.15
16S rRNA genes identified from 1,984 genomes in 533 taxa
Tree constructed on 2022-02-09 using FastTree version 2.1.10.Dbl
Preferred Habitat:
👄 Oral
👃 Nasal
♀ Vaginal
� Unassigned
⚠ None Oral/Nasal Reference Genome
HMT-815 SEQF2671 Methanobrevibacter oralis JMR01 (2,107,831 bps in 14 contigs) — 1/1 16S rRNA (1,473 nt) 👄
0.000573941
HMT-815 SEQF3103 Methanobrevibacter oralis M2 CSUR P5920 (2,124,480 bps in 106 contigs) — 1/1 16S rRNA (1,475 nt) 👄
0.000000005
HMT-815 SEQF3102 Methanobrevibacter oralis DSM 7256 (2,140,433 bps in 136 contigs) — 1/1 16S rRNA (1,475 nt) 👄
0.000572292
0.000
0.000000005
1.000
0.112406
HMT-619 SEQF3184 Porphyromonas gingivalis SJD4 (2,249,706 bps in 147 contigs) — 2/2 16S rRNAs (787 nt) 👄
0.003988301
HMT-643 SEQF3523 Prevotella intermedia ATCC 49046 (2,673,161 bps in 55 contigs) — 2/2 16S rRNAs (440 nt) 👄
0.010406448
1.000
0.089036768
HMT-686 SEQF3343 Streptococcus mutans G123 (1,977,039 bps in 122 contigs) — 2/2 16S rRNAs (436 nt) 👄
0.000000005
HMT-686 SEQF3396 Streptococcus mutans ATCC 55676 (2,050,195 bps in 24 contigs) — 2/2 16S rRNAs (929 nt) 👄
0.000000005
0.998
0.052362852
1.000
0.389581447
HMT-874 SEQF2626 Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 MGEHA (1,109,712 bps in 62 contigs) — 1/1 16S rRNA (1,487 nt) 👄
0.061670441
HMT-991 SEQF3107 Absconditabacteria_(SR1)_[G-1] bacterium_HMT_991 RAAC1_SR1_1 (1,177,760 bps in 1 contig) — 1/1 16S rRNA (1,492 nt) ⚠
0.045388958
1.000
0.145704390
HMT-996 SEQF2724 Gracilibacteria_(GN02)_[G-3] bacterium_HMT_996 JGI 0000069-P22 (341,011 bps in 30 contigs) — 1/1 16S rRNA (1,465 nt) ⚠
0.156704315
HMT-632 SEQF1722 Mycoplasma hominis ATCC 23114 (665,445 bps in 1 contig) — 1/2 16S rRNAs (1,506 nt) �
0.0
HMT-632 SEQF1722 Mycoplasma hominis ATCC 23114 (665,445 bps in 1 contig) — 2/2 16S rRNAs (1,506 nt) �
0.0
0.019720978
HMT-704 SEQF2553 Mycoplasma orale ATCC 23714 (710,549 bps in 21 contigs) — 1/1 16S rRNA (1,506 nt) 👄
0.009914972
HMT-754 SEQF2607 Mycoplasma salivarium ATCC 23064 (713,526 bps in 17 contigs) — 1/1 16S rRNA (1,510 nt) 👄
0.010541792
0.842
0.012397320
1.000
0.040900191
HMT-607 SEQF1928 Mycoplasmopsis fermentans JER (977,524 bps in 1 contig) — 2/2 16S rRNAs (1,501 nt) �
0.000509371
HMT-607 SEQF1263 Mycoplasmopsis fermentans M64 (1,118,751 bps in 1 contig) — 2/2 16S rRNAs (1,501 nt) �
0.000000005
0.858
0.000509158
HMT-607 SEQF1263 Mycoplasmopsis fermentans M64 (1,118,751 bps in 1 contig) — 1/2 16S rRNAs (1,501 nt) �
0.0
HMT-607 SEQF1265 Mycoplasmopsis fermentans PG18 (1,004,014 bps in 1 contig) — 1/1 16S rRNA (1,501 nt) �
0.0
HMT-607 SEQF1928 Mycoplasmopsis fermentans JER (977,524 bps in 1 contig) — 1/2 16S rRNAs (1,501 nt) �
0.0
0.000000005
1.000
0.059312867
1.000
0.054819199
HMT-732 SEQF2571 Mycoplasma pneumoniae M129-B7 (816,451 bps in 1 contig) — 1/1 16S rRNA (1,504 nt) �
0.000000005
HMT-732 SEQF1271 Mycoplasma pneumoniae M129 (816,394 bps in 1 contig) — 1/1 16S rRNA (1,504 nt) �
0.0
HMT-732 SEQF2156 Mycoplasma pneumoniae 309 (817,176 bps in 1 contig) — 1/1 16S rRNA (1,504 nt) �
0.0
HMT-732 SEQF2157 Mycoplasma pneumoniae FH (811,088 bps in 1 contig) — 1/1 16S rRNA (1,504 nt) �
0.0
0.000492495
0.945
0.006314496
HMT-616 SEQF1267 Mycoplasma genitalium G37 (580,076 bps in 1 contig) — 1/1 16S rRNA (1,506 nt) �
0.0
HMT-616 SEQF2779 Mycoplasma genitalium JCVI-1.0 (582,970 bps in 1 contig) — 1/1 16S rRNA (1,506 nt) �
0.0
0.000000005
HMT-616 SEQF2378 Mycoplasma genitalium M6320 (579,796 bps in 1 contig) — 1/1 16S rRNA (1,506 nt) �
0.000486940
HMT-616 SEQF2377 Mycoplasma genitalium M6282 (579,504 bps in 1 contig) — 1/1 16S rRNA (1,506 nt) �
0.000486487
HMT-616 SEQF2375 Mycoplasma genitalium M2288 (579,558 bps in 1 contig) — 1/1 16S rRNA (1,506 nt) �
0.0
HMT-616 SEQF2376 Mycoplasma genitalium M2321 (579,977 bps in 1 contig) — 1/1 16S rRNA (1,506 nt) �
0.0
0.000486469
0.000
0.000000005
0.000
0.000000006
0.966
0.006437596
1.000
0.160835589
0.997
0.042484361
HMT-987 SEQF2722 Saccharibacteria_(TM7)_[G-7] bacterium_HMT_987 GTL1 (679,415 bps in 132 contigs) — 1/1 16S rRNA (1,500 nt) ⚠
0.050696244
HMT-989 SEQF2737 Saccharibacteria_(TM7)_[G-7] bacterium_HMT_989 RAAC3_TM7_1 (845,464 bps in 1 contig) — 1/1 16S rRNA (1,592 nt) ⚠
0.048331018
HMT-986 SEQF2723 Saccharibacteria_(TM7)_[G-7] bacterium_HMT_986 JGI 0001002-L20 (752,653 bps in 68 contigs) — 1/1 16S rRNA (1,464 nt) ⚠
0.016948550
HMT-988 SEQF2721 Candidatus_Saccharimonas aalborgensis NA (1,013,781 bps in 1 contig) — 1/1 16S rRNA (1,491 nt) ⚠
0.034745242
HMT-955 SEQF3099 Saccharibacteria_(TM7)_[G-8] bacterium_HMT_955 PM004 (842,202 bps in 1 contig) — 1/1 16S rRNA (1,463 nt) 👄
0.000000005
HMT-955 SEQF3135 Saccharibacteria_(TM7)_[G-8] bacterium_HMT_955 FS14P (873,056 bps in 1 contig) — 1/1 16S rRNA (1,471 nt) 👄
0.000000005
HMT-955 SEQF3136 Saccharibacteria_(TM7)_[G-8] bacterium_HMT_955 FS17P (885,960 bps in 1 contig) — 1/1 16S rRNA (1,472 nt) 👄
0.0
HMT-955 SEQF3140 Saccharibacteria_(TM7)_[G-8] bacterium_HMT_955 CM003 (835,009 bps in 1 contig) — 1/1 16S rRNA (1,472 nt) 👄
0.0
HMT-955 SEQF3142 Saccharibacteria_(TM7)_[G-8] bacterium_HMT_955 CM009 (841,891 bps in 1 contig) — 1/1 16S rRNA (1,472 nt) 👄
0.0
0.000000005
0.000
0.000000005
0.980
0.009925854
HMT-349 SEQF3678 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 PM007 (1,021,750 bps in 1 contig) — 1/1 16S rRNA (1,473 nt) 👄
0.015114309
HMT-957 SEQF3100 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 BB001 (782,344 bps in 1 contig) — 1/1 16S rRNA (1,464 nt) 👄
0.000000005
HMT-952 SEQF2796 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_952 TM7x (705,138 bps in 1 contig) — 1/1 16S rRNA (1,464 nt) 👄
0.0
HMT-952 SEQF3101 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_952 TM7x (705,178 bps in 1 contig) — 1/1 16S rRNA (1,464 nt) 👄
0.0
0.001147870
HMT-488 SEQF3144 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 FS03P (858,111 bps in 1 contig) — 1/1 16S rRNA (1,567 nt) 👄
0.003730298
HMT-488 SEQF3134 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 FS15P (931,438 bps in 1 contig) — 1/1 16S rRNA (1,567 nt) 👄
0.003067866
HMT-488 SEQF3133 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 FS13P (831,234 bps in 1 contig) — 1/1 16S rRNA (1,568 nt) 👄
0.000965496
HMT-488 SEQF3139 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 CM002 (877,855 bps in 1 contig) — 1/1 16S rRNA (1,567 nt) 👄
0.002048965
0.931
0.002018220
0.715
0.000530610
HMT-488 SEQF3098 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 AC001 (889,964 bps in 1 contig) — 1/1 16S rRNA (1,560 nt) 👄
0.000505297
HMT-488 SEQF3137 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 AC002 (847,999 bps in 1 contig) — 1/1 16S rRNA (1,568 nt) 👄
0.0
HMT-488 SEQF3170 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 HB001 (847,999 bps in 1 contig) — 1/1 16S rRNA (1,568 nt) 👄
0.0
0.000000006
0.991
0.004629710
HMT-488 SEQF3131 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 FS05P-B (853,179 bps in 1 contig) — 1/1 16S rRNA (1,567 nt) 👄
0.003833675
HMT-488 SEQF3138 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 CM001 (856,991 bps in 1 contig) — 1/1 16S rRNA (1,568 nt) 👄
0.001769623
0.939
0.002606724
HMT-488 SEQF3132 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 FS07P-B (848,784 bps in 1 contig) — 1/1 16S rRNA (1,567 nt) 👄
0.003147850
HMT-488 SEQF3141 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 CM006 (893,660 bps in 1 contig) — 1/1 16S rRNA (1,472 nt) 👄
0.002356200
HMT-488 SEQF3143 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_488 CM010 (839,600 bps in 1 contig) — 1/1 16S rRNA (1,472 nt) 👄
0.000000005
0.992
0.004811806
0.918
0.003215222
0.956
0.002819935
0.984
0.004634105
0.953
0.003353941
0.997
0.005878329
0.948
0.003850354
1.000
0.038430144
0.975
0.014267790
0.937
0.015932109
0.992
0.019795041
0.787
0.014347958
0.943
0.018802776
1.000
0.123734867
HMT-812 SEQF1245 Helicobacter pylori J99 (1,643,831 bps in 1 contig) — 1/2 16S rRNAs (1,491 nt) �
0.000000005
HMT-812 SEQF1245 Helicobacter pylori J99 (1,643,831 bps in 1 contig) — 2/2 16S rRNAs (1,491 nt) �
0.000549696
0.734
0.000560189
HMT-812 SEQF1644 Helicobacter pylori P12 (1,684,038 bps in 2 contigs) — 1/2 16S rRNAs (1,492 nt) �
0.0
HMT-812 SEQF1644 Helicobacter pylori P12 (1,684,038 bps in 2 contigs) — 2/2 16S rRNAs (1,492 nt) �
0.0
0.001103420
HMT-812 SEQF1244 Helicobacter pylori HPAG1 (1,605,736 bps in 2 contigs) — 1/2 16S rRNAs (1,491 nt) �
0.0
HMT-812 SEQF1244 Helicobacter pylori HPAG1 (1,605,736 bps in 2 contigs) — 2/2 16S rRNAs (1,491 nt) �
0.0
0.000551704
HMT-812 SEQF2409 Helicobacter pylori India7 (1,675,918 bps in 1 contig) — 1/2 16S rRNAs (1,492 nt) �
0.0
HMT-812 SEQF2409 Helicobacter pylori India7 (1,675,918 bps in 1 contig) — 2/2 16S rRNAs (1,492 nt) �
0.0
0.000548560
HMT-812 SEQF1243 Helicobacter pylori 52 (1,568,826 bps in 1 contig) — 1/2 16S rRNAs (1,493 nt) �
0.0
HMT-812 SEQF1243 Helicobacter pylori 52 (1,568,826 bps in 1 contig) — 2/2 16S rRNAs (1,493 nt) �
0.0
0.000000006
HMT-812 SEQF1351 Helicobacter pylori 98-10 (1,571,772 bps in 51 contigs) — 1/1 16S rRNA (1,493 nt) �
0.001650020
HMT-812 SEQF1119 Helicobacter pylori Shi470 (1,608,548 bps in 1 contig) — 1/2 16S rRNAs (1,493 nt) �
0.0
HMT-812 SEQF1119 Helicobacter pylori Shi470 (1,608,548 bps in 1 contig) — 2/2 16S rRNAs (1,493 nt) �
0.0
0.001094793
0.000
0.000000005
0.925
0.000552129
0.000
0.000000005
HMT-812 SEQF1643 Helicobacter pylori G27 (1,663,013 bps in 2 contigs) — 1/2 16S rRNAs (1,492 nt) �
0.0
HMT-812 SEQF1643 Helicobacter pylori G27 (1,663,013 bps in 2 contigs) — 2/2 16S rRNAs (1,492 nt) �
0.0
0.000000005
HMT-812 SEQF1714 Helicobacter pylori B38 (1,576,758 bps in 1 contig) — 1/2 16S rRNAs (1,492 nt) �
0.0
HMT-812 SEQF1714 Helicobacter pylori B38 (1,576,758 bps in 1 contig) — 2/2 16S rRNAs (1,492 nt) �
0.0
0.000549787
HMT-812 SEQF2410 Helicobacter pylori Lithuania75 (1,640,673 bps in 2 contigs) — 1/2 16S rRNAs (1,492 nt) �
0.0
HMT-812 SEQF2410 Helicobacter pylori Lithuania75 (1,640,673 bps in 2 contigs) — 2/2 16S rRNAs (1,492 nt) �
0.0
0.001650366
HMT-812 SEQF1352 Helicobacter pylori B128 (1,649,221 bps in 73 contigs) — 1/1 16S rRNA (1,491 nt) �
0.001096110
HMT-812 SEQF1240 Helicobacter pylori 26695 (1,667,867 bps in 1 contig) — 1/2 16S rRNAs (1,489 nt) �
0.003321271
HMT-812 SEQF1240 Helicobacter pylori 26695 (1,667,867 bps in 1 contig) — 2/2 16S rRNAs (1,488 nt) �
0.001098657
0.870
0.001098231
0.771
0.000551783
0.000
0.000000005
0.857
0.000549068
0.000
0.000000005
0.909
0.001096699
0.756
0.000541608
0.569
0.001670634
1.000
0.069320865
HMT-643 SEQF3521 Prevotella intermedia ZT (2,790,340 bps in 168 contigs) — 1/3 16S rRNAs (490 nt) 👄
0.000000005
HMT-643 SEQF3521 Prevotella intermedia ZT (2,790,340 bps in 168 contigs) — 2/3 16S rRNAs (489 nt) 👄
0.005552234
0.954
0.009893658
HMT-842 SEQF2614 Campylobacter ureolyticus DSM 20703 (1,740,590 bps in 35 contigs) — 1/1 16S rRNA (1,500 nt) �
0.002058011
HMT-842 SEQF2613 Campylobacter ureolyticus ACS-301-V-Sch3b (1,698,455 bps in 7 contigs) — 1/2 16S rRNAs (1,500 nt) �
0.0
HMT-842 SEQF2613 Campylobacter ureolyticus ACS-301-V-Sch3b (1,698,455 bps in 7 contigs) — 2/2 16S rRNAs (1,500 nt) �
0.0
0.001037785
0.257
0.001572451
1.000
0.035840041
HMT-776 SEQF3088 Campylobacter sputorum INTA08/209 (1,780,580 bps in 51 contigs) — 1/1 16S rRNA (1,501 nt) �
0.020626803
HMT-623 SEQF2434 Campylobacter gracilis RM3268 (2,255,573 bps in 33 contigs) — 1/1 16S rRNA (1,501 nt) 👄
0.023979298
HMT-748 SEQF1575 Campylobacter rectus RM3267 (2,513,107 bps in 89 contigs) — 1/1 16S rRNA (1,499 nt) 👄
0.002683095
HMT-763 SEQF2476 Campylobacter showae CC57C (2,187,351 bps in 273 contigs) — 1/1 16S rRNA (1,499 nt) 👄
0.000323888
HMT-763 SEQF1731 Campylobacter showae RM3277 (2,072,007 bps in 33 contigs) — 1/1 16S rRNA (1,499 nt) 👄
0.000000005
HMT-763 SEQF2416 Campylobacter showae CSUNSWCD (2,125,173 bps in 23 contigs) — 1/1 16S rRNA (1,499 nt) 👄
0.001049831
0.832
0.001252801
0.999
0.012858512
0.991
0.012312315
0.995
0.009555426
HMT-580 SEQF2488 Campylobacter curvus DSM 6644 (1,954,904 bps in 8 contigs) — 1/1 16S rRNA (1,639 nt) 👄
0.006276811
HMT-580 SEQF1178 Campylobacter curvus 525.92 (1,971,270 bps in 1 contig) — 1/3 16S rRNAs (1,701 nt) 👄
0.0
HMT-580 SEQF1178 Campylobacter curvus 525.92 (1,971,270 bps in 1 contig) — 2/3 16S rRNAs (1,701 nt) 👄
0.0
HMT-580 SEQF1178 Campylobacter curvus 525.92 (1,971,270 bps in 1 contig) — 3/3 16S rRNAs (1,701 nt) 👄
0.0
0.021055101
0.971
0.010402643
HMT-575 SEQF2579 Campylobacter concisus ATCC 51562 (1,841,750 bps in 21 contigs) — 1/1 16S rRNA (1,499 nt) 👄
0.000517215
HMT-575 SEQF2578 Campylobacter concisus ATCC 51561 (1,995,701 bps in 69 contigs) — 1/1 16S rRNA (1,499 nt) 👄
0.001022383
HMT-575 SEQF2326 Campylobacter concisus UNSWCD (1,778,912 bps in